SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11574

Length: 1608 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11574

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9784	51/51

Source	Descriptions	Term	Type	Identity
AutoFact	Argininosuccinate synthase n=2 Tax=Picea sitchensis RepID=A9NXV1_PICSI	-	-	91%
FL-Next	sp=Argininosuccinate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	argininosuccinate synthase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Argininosuccinate synthase.	EC:6.3.4.5	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	90%
Blast2go	Arginine and proline metabolism	00330	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	arginine biosynthetic process	GO:0006526	Biological Process	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	argininosuccinate synthase activity	GO:0004055	Molecular Function	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Argininosuccinate synthase	IPR001518	-	-
Sma3	Argininosuccinate synthase, conserved site	IPR018223	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXV1

Fln msg: your sequence is shorter than subject: 459 - 512

Fln protein: QQISRLGFSSSELLGETISDRARWSSKVSQVQAIQMALAAEGDTKLTKTKSGGGIRGKLNKVVLAYSGGLDTSVIVPWLRENYDCEVVCFTADVGQGVGEMEGLEAKAKASGASQLVIKDLKEEFVKEYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDIKGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYVMTVDPEEAPEEPEYVEIGIVSGIPVSINGKELSPANLLAVLNELGGRHGIGRVDMVENRLVGMKSRGVYETPGGTILTAAVRELESLTLDRESMQVKDNIALKYAELVYAGRWFDPLRESMDAFMEKITETTTGAVTLKLYKGSLSVASRRSQYSLYRQDISSFEEGSGIYNQADAAGFIRLYGLPIRVRAMLQSGL*

Protein Length: 460

Fln nts: CTCAACAAATTTCAAGGCTAGGGTTTTCTTCAAGTGAATTATTGGGGGAAACAATTTCTGATCGTGCAAGGTGGTCGAGCAAAGTATCCCAAGTTCAAGCTATTCAAATGGCACTGGCTGCTGAAGGTGATACAAAACTGACAAAGACAAAGAGTGGAGGAGGAATACGTGGAAAATTGAATAAAGTGGTTTTGGCCTATAGTGGTGGATTAGACACATCAGTGATTGTCCCTTGGTTGAGGGAAAACTATGACTGCGAGGTGGTTTGCTTTACTGCCGATGTTGGACAGGGCGTGGGAGAAATGGAAGGTCTGGAGGCAAAAGCTAAAGCAAGTGGTGCAAGCCAATTAGTCATTAAAGACTTGAAAGAGGAATTTGTAAAAGAATATGTGTTTCCATGTTTACGGGCTGGTGCCATTTATGAGAGGAAGTATTTGCTAGGGACATCAATGGCCCGTCCTGTCATTGCAAAGGCTATGGTGGATGTTGCTAGAGAAGTTGGAGCGGATGCAGTTTCACATGGGTGCACAGGAAAAGGCAATGATCAGGTTAGATTTGAATTGACTTTCTTCGCACTGAATCCAAAACTCAACGTTGTCGCACCATGGCGTGAGTGGGATATAAAAGGACGAGAAGATGCCATTGAGTATGCAAAGAAACATAATGTTCCTGTTCCGGTTACTAAGAAATCAATTTACAGCAGAGACCGCAATCTATGGCATCTTAGCCATGAGGGAGATATTCTTGAAGACCCTGCTAATGAACCGAAGAAAGACATGTACGTAATGACTGTGGATCCAGAGGAAGCACCAGAAGAACCGGAATATGTGGAGATAGGAATTGTATCTGGAATACCAGTTTCAATAAATGGAAAAGAGCTTTCTCCCGCAAATTTATTGGCAGTGTTGAATGAACTAGGAGGAAGGCATGGTATTGGGCGCGTGGACATGGTGGAGAACAGATTGGTTGGTATGAAAAGTCGAGGTGTCTATGAAACTCCCGGGGGCACTATTCTAACTGCTGCTGTGCGGGAGTTGGAATCCCTCACACTTGATAGAGAATCCATGCAGGTTAAAGACAATATTGCTTTAAAATATGCAGAGTTGGTTTATGCGGGAAGATGGTTTGATCCATTAAGGGAATCCATGGATGCATTTATGGAAAAGATCACAGAGACAACCACAGGAGCTGTAACATTGAAACTTTACAAGGGTTCTTTGTCTGTTGCAAGCCGAAGAAGTCAATACAGCTTATATCGCCAAGATATATCTTCGTTCGAGGAGGGTAGTGGAATTTACAATCAAGCGGATGCTGCTGGTTTTATTCGTCTATATGGGCTTCCAATCAGAGTTCGAGCCATGCTACAAAGTGGACTATGA___TCCCATTGAGCTTTAGAGCAAACGTTATTCATAATGCCATTTTATAGGTTCTGTTTAAGGGTTTAGGGTTAAAGGTCAATAAGGCATCAGTTCAGCTTTGCATCATAATTTGTGTTCCCGTGAGAAGTAACCCAAAGAGTCAAATTTGTATTTGTATATGATAAGACTCTCTCTTGAATCTGACCCTCCCTTAAAGTTAGAAACTATTGCACTATTGCTATTTCAGAGT

Fln Alignment:

Contig11574___ISRLGFSSSELLGETISDRARWSSKVSQVQAIQMALAAEGDTKLTKTKSGGGIRGKLNKVVLAYSGGLDTSVIVPWLRENYDCEVVCFTADVGQGVGEMEGLEAKAKASGASQLVIKDLKEEFVKEYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDIKGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYVMTVDXXXXXXXXXYVEIGIVSGIPVSINGKELSPANLLAVLNELGGRHGIGRVDMVENRLVGMKSRGVYETPGGTILTAAVRELESLTLDRESMQVKDNIALKYAELVYAGRWFDPLRESMDAFMEKITETTTGAVTLKLYKGSLSVASRRSQYSLYRQDISSFEEGSGIYNQADAAGFIRLYGLPIRVRAMLQSGL
A9NXV1__________________ISKLGFSSSKLLGAAISHHARWSSEVSQVQAIQMVLATEDDTKKTNARSGGGKRGKLNKVVLAYSGGLDTSVIVPWLRENYDCEVVCFTADVGQGVGEMEGLEAKAKASGASQLVIKDLKEEFVKEYVFPCLRAGAVYERKYLLGTSMARPVIAKAMVDVAREVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDIKGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYVMTVDPEEAPEEPEYVEIGIVSGVPVSINGKELSPANLLAILNELGGRHGIGRVDMVENRLVGMKSRGVYETPGGTILTTAVRELESLTLDRESMQVKDTIALKYAELVYAGRWFDPLRQSMDAFMEKITETTTGAVTLKLYKGSLSVASRRSQYSLYRQDISSFEEGSGIYNQADAAGFIRLYGLPIRVRAMLENGL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1469	11			88	0.923564
1521	14		85		0.993533
1523		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain