SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11559

Length: 1785 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11559

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16756	34/70
SustainPine v2.0	sp_v2.0_unigene60462	26/70
SustainPine v2.0	sp_v2.0_unigene60654	10/70

Source	Descriptions	Term	Type	Identity
AutoFact	Pectin lyase-like protein [Arabidopsis thaliana] gb\|AAF23225.1\|AC013454_12 putative pectinacetylesterase [Arabidopsis thaliana] gb\|AAL16135.1\|AF428303_1 AT3g05910/F2O10_3 [Arabidopsis thaliana] gb\|AAK92782.1\| putative pectinacetylesterase [Arabidopsis tha	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein notum homolog	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pectinacetylesterase	IPR004963	-	0.0	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLS4

Fln msg:

Fln protein: MHRPMVTGRKMTRGSLDFEFALFGVVLLLVICNGKAETWEIGGRISSNISETYWEEAKDSYPPGALMVGLSLVKGAAEIGAVCLDGTLPGYHLSRGWDSGANNWLIQLEGGGWCNDLRTCIYRKTTRRGSSRYMERAIVFSGILSNKPSENPDFYNWNRVKLRYCDGASFTGDVEGENEVNKLYFRGQRIWRAAMADLLVEGMKNAQQALLSGCSAGGLASIIHCDEFRDLMPRSSKVKCLSDAGFFLDVMDVSGVHYLRSIYNGVVTMQGAAKNLPRACTSRMDPARCFFPQHLLQHINTPLFILNAAYDSWQILSSLVPTTADPQGHWHFCRLNPANCSASQLQVLQGFRMDMLNELRGIAGSRVGGMFINSCFAHCQSERQDTWFAPGSPRLKKTIAESVGDWYFDRSPSKDIDCPYPCDQTCHNLIFKSK*

Protein Length: 436

Fln nts: GCTCACCTCAGTTGCTGTGGAGAAAGTTTTGCTCTCATTCAGTTGTTTGCATTGT_-_ATGCATCGTCCCATGGTCACTGGGAGGAAGATGACCAGGGGATCTTTGGACTTTGAATTTGCTCTGTTTGGGGTGGTCCTGCTTCTAGTAATCTGTAATGGAAAGGCAGAAACTTGGGAGATTGGTGGTAGGATCAGCAGCAATATTTCAGAGACGTATTGGGAAGAGGCAAAAGACTCTTATCCTCCAGGTGCTCTTATGGTGGGCTTGTCTCTTGTGAAAGGTGCAGCGGAGATAGGAGCTGTTTGCTTGGATGGAACTTTACCAGGTTATCATCTAAGTAGGGGATGGGATTCAGGGGCGAATAATTGGCTCATACAGCTTGAGGGTGGAGGATGGTGTAATGATTTGAGAACATGCATTTACCGCAAAACAACTCGTCGAGGTTCATCTCGATACATGGAGCGTGCAATAGTATTCTCAGGCATTCTAAGCAATAAGCCTTCAGAGAATCCAGATTTCTATAATTGGAATCGGGTCAAGCTTCGATATTGTGATGGCGCATCGTTCACTGGAGACGTGGAAGGTGAAAATGAGGTTAATAAACTTTATTTTAGAGGACAAAGGATTTGGCGAGCTGCTATGGCTGATCTCTTGGTAGAAGGAATGAAGAACGCACAACAGGCTTTGCTTTCAGGATGCTCAGCTGGGGGTTTGGCATCAATCATTCACTGTGACGAATTTCGGGATTTGATGCCAAGGAGTTCTAAAGTGAAATGTCTTAGTGATGCTGGATTCTTTCTCGATGTGATGGATGTGTCTGGAGTGCACTACTTAAGATCTATCTACAATGGTGTTGTGACAATGCAGGGGGCTGCAAAAAACTTACCAAGAGCATGTACCTCACGAATGGATCCAGCCAGGTGCTTCTTTCCGCAGCATCTGTTGCAGCATATTAATACCCCACTTTTCATTTTGAATGCAGCATATGACTCGTGGCAGATCCTTAGCAGTTTGGTCCCAACGACTGCTGATCCTCAGGGCCATTGGCACTTCTGTAGACTAAATCCAGCTAATTGCAGTGCTAGTCAGCTTCAAGTATTGCAAGGTTTCAGGATGGACATGCTTAATGAATTGAGGGGGATTGCTGGCTCTCGAGTTGGAGGCATGTTTATCAATTCCTGCTTTGCACATTGCCAGTCCGAGAGGCAGGACACTTGGTTTGCTCCTGGCTCACCGAGGCTTAAGAAGACCATTGCAGAGTCAGTGGGGGATTGGTATTTTGATCGAAGTCCTTCGAAGGATATCGATTGTCCATACCCTTGTGACCAAACTTGTCACAACCTCATTTTCAAATCGAAATAG___CGCTGGCAGGATCTACATCCTTGAATTCGTTTCCAATTTCTTCAATTTAACAAGTGTTGGGAATAACGCATAGCATTCAAGTGATCCTGGTATCAAGTGAAAGCTATTGTGGAATAGATGAAATTTCATCTTCCAGTATTGATTTGTAAAATTATCATTGGTCGTTGTATTCTTTATGGGGTGAGGCGAAAACTGGTGCATGGCCAACATGCCAAAGGAAGATGATGTTTATAAATTATTGGCAATAATTTATATGTAATGTTTAAATAATTGATATTTCATTCTTAGATGTCCATTCTTCACTTTTTACTAGGCAGAAGTAAATATGACAAATGTTTGGGTTGGAAGCAACTCTTCATTTCTATCCGATTCTCTTATAAAAATCAAAATGGCATTTCTCTTGTTGAGGATTTCTAGCCACATAC

Fln Alignment:

Contig11559___PMVTGRKMTRGSLDFEFALFGVVLLLVICNGKAETWEIGGRISSNISETYWEEAKDSYPPGALMVGLSLVKGAAEIGAVCLDGTLPGYHLSRGWDSGANNWLIQLEGGGWCNDLRTCIYRKTTRRGSSRYMERAIVFSGILSNKPSENPDFYNWNRVKLRYCDGASFTGDVEGENEVNKLYFRGQRIWRAAMADLLVEGMKNAQQALLSGCSAGGLASIIHCDEFRDLMPRSSKVKCLSDAGFFLDVMDVSGVHYLRSIYNGVVTMQGAAKNLPRACTSRMDPARCFFPQHLLQHINTPLFILNAAYDSWQILSSLVPTTADPQGHWHFCRLNPANCSASQLQVLQGFRMDMLNELRGIAGSRVGGMFINSCFAHCQSERQDTWFAPGSPRLKKTIAESVGDWYFDRSPSKDIDCPYPCDQTCHNLIFKSK
B8LLS4__________________PMVTGRKMTRGSLDFEFALFGVVLLVVMCIGKSETWEIGGRISSNVSEVSWEEAAVSYPPGALMVGLSLVKGAAEIGAVCLDGTLPGYHLSRGWGSGANNWLIQLEGGGWCNDLRTCVYRKTTRRGSSRYMEREIVFSGILSNKRSENPDFYNWNRVKLRYCDGASFAGDMEGENEVPKLYFRGQRIWRAAMADLLVEGMKNAQQALLSGCSAGGLASIIHCDDFRDLMPRSSKVKCLSDAGFFLDVMDVSGVHSLRSIYNGVVTMQGVAKNLPRACTSRMDPAQCFFPQHLLQDIKTPLFILNAGYDSWQILSSLVPTAADPQGHWHFCRLNPANCSASQLQVLQGFRMDMLNELRVLAGSRVGGMFINSCFAHCQSERQDTWFAPDSPRLKKTIAESVGDWYFDRSPSKEIDCAYPCDQTCHNLIFKSK

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
304			66	33	0.997452
491		88		11	0.923564
584	16			83	0.994512
585		16	83		0.994512
587	80			20	0.995493
588	80			20	0.995493
655	14			85	0.993533
658	85			14	0.993533
677	71			28	1.0
678		71		28	1.0
740	12			87	0.992554
741	12	87			0.992554
742			87	12	0.992554
744			87	12	0.992554
788	11	88			0.923564
869	33		66		0.997452
870		33	66		0.997452
871	33		66		0.997452
872		66		33	0.997452
1052	22			77	0.999999
1053		77		22	0.999999
1056	10			90	0.90298
1059	90			10	0.90298
1139		50	50		1.0
1140		16	83		0.994512
1312		75	25		0.996473
1326		25		75	0.996473
1491	83		16		0.994512
1521	16			83	0.994512
1600	75			25	0.996473
1732	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain