SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11554

Length: 991 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11554

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17559	61/61

Source	Descriptions	Term	Type	Identity
AutoFact	Type 1 chlorophyll a /b-binding protein n=1 Tax=Pinus sylvestris RepID=Q02069_PINSY	-	-	94%
FL-Next	tr=Type 1 chlorophyll a /b-binding protein; Pinus sylvestris (Scots pine).	-	-	94%
Blast2go	light-harvesting complex i protein lhca1	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q02069

Fln msg:

Fln protein: MATAVGCSPAVAPVAFAGALSSAKSRFFSPTNSLSLGVSNGCRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWAAVPGSQATYFGVPVPWGYLPIILAVEFLAIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEILIPRSLLPE*

Protein Length: 249

Fln nts: AATGTTACAATTTTCTTGACACCCAGGCACCATAATCTTGGAGATTAGCTAATCTAGCTTTGGAAAAC_-_ATGGCGACCGCCGTGGGATGTTCGCCTGCTGTAGCGCCAGTTGCATTTGCAGGGGCACTTTCTTCAGCAAAGTCCCGATTTTTCTCACCAACTAACAGTCTTTCGTTGGGCGTCAGCAATGGCTGCAGAGTGAGCATGTCTGCCGAATGGATGCCTGGCCAGCCCCGCCCCCCTCATCTCGATGGATCAGCCCCTGGCGATTTTGGATTTGATCCACTGCGTTTGGGAGTCATACCTGAGAATCTGGAACGCTATAAGGAGTCCGAGCTGATTCATTGCAGATGGGCAATGCTTGCAGTTCCAGGAATGTTAATACCTGAAGCACTGGGACTGGGCAACTGGGTTGAAGCTCAGAAGTGGGCTGCAGTACCTGGTAGCCAAGCAACCTATTTTGGTGTCCCTGTGCCATGGGGATATCTTCCCATCATACTTGCTGTAGAGTTTCTTGCAATTGCATTTGTTGAGTCCCAAAGAAACGGGGAACCAGATCCTGAGAAGAGAAAATATCCCGGTGGTGCATTTGATCCTCTTGGATTTTCAAAGGACCCTGTCAAGTTCAAAGAATACAAAGTAAAAGAGATAAAAAATGGTCGTCTTGCACTTTTGGCATTCGTTGGATTCTGTGTTCAAGCTTCGGCGAACCCTGGAACAGGACCATTGGAGAACCTGGCTACTCATCTCTCTGACCCATGGCACAAAAATATTGCTGAGATTTTAATTCCTAGATCTCTACTGCCAGAGTAA___ATTCAGATTCTAATGTCGTAGTTATGTGTTTGTGAGCCGAAAGGGCTAGATTATGCCTCGTCTGTCTGTGTATGGATAACATTGTAGAATGTTTTTAATGCTTATCAGGACACGTACTTTTGTGCACCACCTGAATTATTGAATGCATTTATGGCCAAATGCGCATCATTGCAGACATT

Fln Alignment:

Contig11554___MATAVGCSPAVAPVAFAGALSSAKSRFFSPTNSLSLGVSNGCRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWAAVPGSQATYFGVPVPWGYLPIILAVEFLAIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEILIPRSLLPE
Q02069__________________MATAVGCSPAVAPVAFAGAFSSAKSRFFSPTSSL-VGRRHGSRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHRNIAEIIIPRSLFPE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
336	25		75		0.996473
591	10			90	0.90298
642			71	28	1.0
645	80	20			0.995493
647	80			20	0.995493
648			80	20	0.995493
660		16	83		0.994512
661	16		83		0.994512
663		83		16	0.994512
752		25	75		0.996473
800		14		85	0.993533
824	14			85	0.993533
828	85			14	0.993533
945		75		25	0.996473
946		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain