SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11549

Length: 1466 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11549

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1367	56/56

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb\|EAZ07603.1\| hypothetical protein OsI_29854 [Oryza sativa Indica Group]	-	-	5.60519e-45	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	dna binding	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	80%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK79

Fln msg: your sequence is shorter than subject: 361 - 383

Fln protein: MEGRETMGLPPSSGMTAGLDSFTPVSQRGHAGGALHTGMAPVMRPHPTSGVTIASNPNNSSSSPFHTDSSTAIVSHGMSMSMQKLEPMKRKRGRPRKYGPDGNMALALAPLSSTPGPFSPSQKRGRGRPPGSGKKQQLAALGSAGVGFTPHVITIASGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLASPDGRVLGGGVAGLLMAASPVQVVVGSFIANGRKPRPANPDSSAGPAQATASGGAATASPVSRGTMSESSGGPGSPMNQSIGDFNSTPSQPVQNMASYQSVGWQGSQSMGEPRRNTDINMSLPGG*

Protein Length: 362

Fln nts: AATGTATCCTCCTTAGGCGCAGGTTTGATCTCGTGATCTATATCAGGCAAGTTGCAAAAGCAAGCACAGGCACGTTGTGTTGGAGCGTTTTAGGAACGGCGGCGGGGGCTTGGATATCTATGC_-_ATGGAAGGGAGAGAAACAATGGGCTTGCCTCCGTCTTCTGGCATGACAGCAGGACTTGATTCATTTACTCCTGTTTCACAGAGAGGTCACGCGGGTGGCGCTCTGCACACGGGGATGGCGCCTGTAATGCGGCCTCATCCGACTTCCGGCGTTACGATTGCGTCGAATCCAAACAATTCTAGCTCTTCTCCATTCCACACAGATTCATCTACAGCCATTGTGTCGCATGGGATGAGTATGAGTATGCAGAAATTGGAACCAATGAAAAGGAAGCGAGGCAGGCCCAGGAAGTATGGGCCTGATGGGAACATGGCACTGGCTTTAGCTCCTCTCTCTTCCACACCAGGTCCATTTTCACCATCACAGAAACGGGGTAGAGGGCGGCCACCTGGGTCAGGGAAAAAGCAGCAGTTGGCTGCATTAGGATCAGCGGGAGTGGGATTCACTCCACATGTGATCACGATAGCATCAGGGGAGGATGTAGCGTCAAAAATAATGTCATTTTCACAGCAAGGACCTAGAGCAGTATGCATCCTCTCGGCAAATGGTGCAATATCTAATGTGACCCTTCGCCAGGCTGCCACGTCTGGTGGCACTGTGACATATGAGGGCCGCTTTGAAATACTTTCCTTGTCAGGTTCATTTTTGCTTACAGAAAATGGTGGAACCCGCAGTAGAACTGGTGGTCTTAGTGTTTCACTGGCAAGCCCTGATGGTCGTGTTCTAGGTGGAGGAGTGGCTGGATTGTTAATGGCAGCCAGTCCTGTACAGGTTGTTGTAGGGAGCTTCATTGCAAATGGTCGAAAGCCTCGGCCAGCCAATCCTGATTCTTCTGCTGGACCAGCACAAGCAACTGCTTCTGGAGGAGCTGCGACTGCTAGTCCTGTTTCTCGGGGAACTATGAGTGAGTCCTCTGGAGGTCCAGGTAGTCCAATGAATCAAAGCATTGGAGATTTTAATAGTACACCTTCACAGCCAGTCCAGAACATGGCCTCCTACCAGTCAGTGGGTTGGCAAGGCTCTCAGTCTATGGGAGAGCCTAGACGTAACACGGATATTAACATGTCTTTGCCCGGTGGATAA___TTATAGAAGCCTTAGGATCTTTCCCTGTGGCTGAATATTGACCACATTTATCAGTTAATCGGCACTGACTACCAACAGGTTTTAAGATGGGCTGCAATTGTTTTCAAACTAACAGATGGAAATTTATAGGTTTCTCAGAACAGATGCAACTTCTCCGCTAGTTGTCACCTGTTTTATTTTAAGAACTAAGACCCGACGTTATATTTCATGCTTGGCAGCATAGACAAAGAATTCTTCGTTTTTGTTCTTCGAAGGACATT

Fln Alignment:

Contig11549___MEGRETMGLPPSSGMTAGLDSFTPVSQRG-----HAGGALHTGMAPVMRPHPTSGVTIAXXXXXXXXXXXXXXXXTAIVSHGMSM------SMQKLEXXXXXXXXXXXXXXXXNMALALAPLSSTPGPFXXXXXXXXXXXXXXXXXXQLAALG-----SAGVGFTPHVITIASGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLASPDXXXXXXXXXXXXXXXSPVQVVVGSFIANGRK--PRPANPDXXXXXXXXXXXXXXXXXXXVSRGTMSE-----XXXXXXXXMNQSIGD--FNSTPSQPVQNMASYQSVGWQGSQSMGEPRRNTDINMSLPGG
B8LK79__________________MESRESMGLSGPGSFGAILHRGVSSSPAGMPTPASAPAAIHTPAA--LRPVVSSVIGVASNPNNPSSSSYATESPATLVPHGVNMGVGMAVSVARTEPLKRKRGRPRKYGPDGSMALALAPLSSVQGSLSPTQKRGRGRPPGSGRKQQLAALGEWLAGSAGMGFTPHVITIAAGEDAATKIMSFSQQGPRAVCILSANGAISHVTLRQPATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLAGPDGRVIGGGVAGMLMAASPVQVVVGSFISNGRKAQAKPVNPEPSIAQSQAGYSGGPAVAIPISKGAVNDSSGGKTGGAGNPSLNQNTGASVSNTSAQQPIQNMATYQSMGWPGSQSTGDLRRNTDINIPLPGG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
995		10	90		0.90298
996	10	90			0.90298
998			90	10	0.90298
1004	11		77	11	0.968132
1008			87	12	0.992554
1069	71			28	1.0
1070	71			28	1.0
1081	33			66	0.997452
1083			33	66	0.997452
1285	83			16	0.994512
1286		83		16	0.994512
1296		14	85		0.993533
1299			83	16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain