SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11548

Length: 1848 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11548

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8031	56/67
SustainPine v2.0	sp_v2.0_unigene21478	2/67
SustainPine v2.0	sp_v2.0_unigene63527	5/67
SustainPine v2.0	sp_v2.0_unigene79468	2/67

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Oryza sativa Japonica Group] gb\|ABA92375.1\| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gb\|EEE51928.1\| hypothetical protein OsJ_33542 [Oryza sativa Japoni	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	rna recognition motif-containing protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	64%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVU4

Fln msg: Separated hits, possible frame ERROR between 346 and 393,

Fln protein: MQDTRGSAEDLHDERDEEQVDLDGDEEAEEIMDEEVEDEGDVEEEEKNRGQEGLDLDLVEDEGSGSQDEQEAEQNVNVSNVDHEKLSEDDGNNDTVEDALPAEGNxxxxxxxxxxxxxxxxxLGRPPHGTEVFVGNLPRNITKEDLISLCEQHGEIFDVIIKREASKLEFAFVTFTTKESAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGFQHLELIKDPKDSTRNRGFAFVEYYNKGCAEKAMKNMTHSKFTLDDKVITVKWATSQRSSSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAIKAIEKTEKYVLEDRELAVSLARPLSDKKPQNMGNPTPFQRPLFSNYQPQAGYGYNPNMYGFGSMGYTQPVIYGRGPAPEGMTMVPMILPDGRIGYVLQQPGNGVGGSAAYRAEGSGSYGGGSASYRSTRNSSGSGRQSGGRNSGGGGSRRYRPY*

Protein Length: 509

Fln nts: GCTGGCGGCAGACAAGAAGATTGCCAAC_-_ATGCAGGATACCAGAGGATCTGCTGAAGATTTGCATGATGAACGTGATGAAGAGCAAGTTGACCTTGATGGCGATGAAGAGGCAGAAGAAATAATGGACGAGGAAGTAGAGGATGAGGGAGATGTTGAGGAGGAAGAGAAAAATCGTGGTCAGGAAGGTCTTGATCTTGATCTAGTAGAAGATGAAGGCTCTGGTTCACAGGATGAGCAGGAAGCAGAGCAAAATGTGAATGTGTCAAATGTGGACCATGAAAAATTATCCGAAGATGATGGCAATAATGATACTGTAGAGGATGCCCTGCCTGCAGAAGGCAATGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTAGGGCGCCCTCCACATGGTACAGAAGTCTTTGTAGGCAATCTACCCCGGAATATTACCAAGGAAGATTTAATAAGTCTTTGTGAACAGCATGGAGAGATTTTTGATGTTATAATAAAGCGGGAGGCAAGCAAGTTAGAATTTGCATTTGTTACATTCACAACCAAGGAGAGTGCCAAGAAGGCCATTGAGACATTGAATGGTTTTGAGTTCAAGGATAAGAAATTAAGAGTATCTGAATCCCAACCAAAAAATCGCCTTTTTCTGGGTAATATACCATCAAATTTGAAAGAAGAGGAGCTTACAAAAATAGTCTCTGAGCAAGGTCCTGGATTTCAACATTTGGAGTTAATAAAGGATCCAAAAGATTCAACAAGGAATCGTGGTTTTGCCTTTGTTGAGTATTACAATAAAGGTTGTGCTGAAAAGGCAATGAAAAACATGACACACTCAAAATTCACCTTGGATGACAAGGTCATAACAGTTAAATGGGCAACTAGTCAGCGTAGCTCATCAGAGGAGGTCAAGTCTGTTTATGTGCGTAATTTGCCCGAGAATGTGACAGAAGAGCAACTAAGAGAACTTTTTGGTCGACATGGTGAAGTTACTAAAGTTGTCCTGTTGGAACAAAAGCCTGGGCAGCCAAAACGTGATTTTGGCTTTGTTCACTATGCTGACCATTCGAGTGCCATAAAGGCTATTGAAAAAACAGAGAAATATGTACTTGAAGATCGGGAGCTCGCAGTATCTTTAGCAAGACCTTTGAGTGATAAGAAGCCCCAAAATATGGGAAACCCTACTCCTTTTCAGAGGCCTCTGTTTTCAAATTATCAACCTCAAGCTGGATATGGTTACAATCCAAACATGTATGGATTTGGCTCCATGGGCTATACTCAGCCTGTTATCTATGGTAGAGGCCCGGCACCTGAAGGCATGACAATGGTACCCATGATACTTCCAGATGGGCGTATCGGATATGTATTACAACAACCAGGGAATGGGGTAGGAGGGTCTGCCGCATACAGAGCAGAAGGGTCTGGTTCTTACGGTGGAGGGTCTGCATCGTATAGGTCAACTAGAAATAGTTCAGGCAGTGGTAGGCAAAGTGGTGGAAGGAATTCTGGCGGTGGCGGCAGTCGGCGCTATCGACCCTATTAG___TGTTTTGTCAAATATGTTTAACTACCAGGGGACAATGATAGGTTTAGATCACCTTTGTGGCAGGTGTTTAACATTGTCTTTATTTTTTATGGCGATCTTTGTAGCTGGATGGTCAAGAATACCATCATTTTCAATTTTGCTATAATGGATTTGGTTATGTCACCGGATCTTCATAGACTTCCCAGCATCTAAAAGAACATCTGGGGGTACATTAGTTGTCGTTTGGAGACATTTTTCTGAATTGTTCTTGACATTTTCAGTACTTGTATTCTTGGACCACTCCCAAGTGGGTTTAAAA

Fln Alignment:

Contig11548___MQDTRGSAEDLHDERDEEQVDLXXXXXXXXXXXXXXXXXXXXXXXXKNRGQEGLDLDLVEDEGSGSQDEQEAEQNVNVSNVDHEKLSEDDGNNDTVEDALPAEGNGxxxxxxxxxxxxxxxxLGRPPHGTEVFVGNLPRNITKEDLISLCEQHGEIFDVIIKREASKLEFAFVTFTTKESAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGFQHLELIKDPKDSTRNRGFAFVEYYNKGCAEKAMKNMTHSKFTLDDKVITVKWATSQRSSSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAIKAIEKTEKYVLEDRELAVSLARPLSDKKPQNMGNPTPFQRPLFSNYQPQAGYGYNPNMYGFGSMGYTQPVIYGRGPAPEGMTMVPMILPDGRIGYVLQQPGNGV
A9NVU4__________________MQDTRGSAEELHDERDEEQVDLDGDEEPEEIMDEEAEDEGDVEEEEKNHGQEGLDLDLVEDEGSGSQDEQEAEQDVNVPNVDHEKLSEDDGNIDTVEDALPAEGNGxxxxxxxxxxxxxxxxLARPPHGTEVFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLEYAFVTFTTKESAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGYQHLELIKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWATSQRSSSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAMKAIEKTEKYTLEDRELSVSLARPLSDKKPQNMGNPTSFQRPLFSNFQPQAGYGYNPNMYGFGSMGYTQPVIYGRGPTPEGMTMVPMILPDGRVGYVLQQPGNAV

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
593	25			75	0.996473
747	16			83	0.994512
748	83	16			0.994512
751	83			16	0.994512
757	16			83	0.994512
758		83		16	0.994512
759		83	16		0.994512
760	83			16	0.994512
813	16		83		0.994512
814	16			83	0.994512
863	11		88		0.923564
867	88			11	0.923564
1361	10		90		0.90298
1362		10	90		0.90298
1363	10		90		0.90298
1364		90		10	0.90298
1365			90	10	0.90298
1470	12	87			0.992554
1475	90		10		0.90298
1476			90	10	0.90298
1501	88	11			0.923564
1503			88	11	0.923564
1507		12		87	0.992554
1520			87	12	0.992554
1527	14		85		0.993533
1529	14		85		0.993533
1530			85	14	0.993533
1531		85		14	0.993533
1536	16		83		0.994512
1539	16		83		0.994512
1540		83		16	0.994512
1547		75		25	0.996473
1548		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain