SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11546

Length: 1126 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11546

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15562	63/63

Source	Descriptions	Term	Type	Identity
AutoFact	Dehydroascorbate reductase n=1 Tax=Pinus bungeana RepID=B2ZHM6_PINBU	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	dehydroascorbate reductase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutathione dehydrogenase (ascorbate).	EC:1.8.5.1	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	85%
Blast2go	Glutathione metabolism	00480	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	protein glutathionylation	GO:0010731	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	glutathione dehydrogenase (ascorbate) activity	GO:0045174	Molecular Function	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVG7

Fln msg: atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MAMISMLSVASTSSLAVAKNLRCDSLESLVLYRRAFNCGLVTHPFGEKGVRSRVLLQRRKIGSTRIVSMAEELEVCVKAAAGAPDKLGDCPFSQRVLLTLEEKKVPYNMKFIDTSNKPDWFLQMNPEGKVPVIKIDDKWIPDSDVITQILEEKYPEPPLATPPEKTTVGSKIFSTFIGFLKSKDPNDGTEQALLNELRALDEYLKDNGPFINGEKISAADLSLAPKLYHLKVALGHFKKWSVPEEFTYVQNYMKALFSRESFQRTNAADEQYIIAGWFPKVNS*

Protein Length: 285

Fln nts: GAGGCCTATAAAGTCAGAG_-_ATGGCTATGATATCCATGCTTAGTGTAGCTTCCACTTCGTCTCTCGCTGTAGCAAAGAATCTGCGCTGCGACTCTCTTGAATCACTGGTTTTGTATCGTAGAGCCTTTAATTGCGGTCTCGTAACCCATCCGTTTGGCGAGAAAGGGGTTAGATCCAGGGTCTTGCTTCAGAGGAGGAAGATTGGCAGTACACGAATTGTGAGCATGGCTGAAGAACTGGAAGTCTGTGTTAAGGCTGCCGCAGGTGCACCTGACAAGCTTGGGGACTGTCCCTTCAGCCAGAGGGTTTTGCTTACTCTCGAGGAAAAGAAGGTCCCATACAACATGAAGTTCATTGATACCAGTAACAAACCTGACTGGTTTTTGCAGATGAACCCTGAAGGAAAAGTTCCTGTCATCAAGATCGATGATAAGTGGATTCCAGACTCTGATGTTATAACCCAGATATTGGAGGAAAAGTACCCGGAACCACCTTTGGCAACCCCACCTGAGAAGACAACTGTAGGGTCAAAGATTTTCTCAACATTCATCGGCTTCTTGAAAAGCAAGGACCCTAACGATGGCACAGAGCAAGCCTTATTGAACGAATTGCGTGCCTTAGACGAATACCTAAAAGACAACGGGCCATTTATTAATGGAGAGAAAATCTCTGCAGCAGACCTCAGCCTAGCCCCAAAGCTTTATCATTTGAAGGTTGCCCTAGGCCACTTCAAAAAGTGGTCTGTTCCAGAAGAGTTCACTTATGTCCAGAATTATATGAAGGCTCTCTTCTCTCGAGAATCATTTCAGCGTACAAACGCTGCAGATGAGCAATATATTATTGCGGGTTGGTTTCCAAAGGTTAATTCTTAA___ATGATGAGATATATGATATAAATGGCCTCACAAAGCAAGCAGATATGTTGTAAATGTAATTCCTAGTAAAACCTGAAATGGCGTAGTTTGATAATGTGTGCAGTTTCCTCCGCTAGACCTATTTGATTGTGGGAAGAGGCCCATTTTGACTTCGTAGAGACCTAGGTTGTGTCCAGTGTATTCGTATAGTTGTCTGTAAACAAATACTAATATTAATATGCTATCAGATGGTATTCAAAATTCAAATAACTTCGG

Fln Alignment:

Contig11546___KNLRCDSLESLVLYRRAFNCGLVTHPFGEKGVRSRVLLQRRKIGSTRIVSMAEELEVCVKAAAGAPDKLGDCPFSQRVLLTLEEKKVPYNMKFIDTSNKPDWFLQMNPEGKVPVIKIDDKWIPDSDVITQILEEKYPEPPLATPPEKTTVGSKIFSTFIGFLKSKDPNDGTEQALLNELRALDEYLKDNGPFINGEKISAADLSLAPKLYHLKVALGHFKKWSVPEEFTYVQNYMKALFSRESFQRTNAADEQYIIAGWFPKVN
A9NVG7__________________KNLRCDSLESLVLYRRAFNCGLLTQLFGERGVRSRVLLQKRKIASTRIVSMAEALDVCVKAATGVPDKLGDCPFSQRVLLTLEEKQVPYNTKLIDTSNKPDWFLQISPEGKVPVLKIDDKWVPDSDVITQILEEKYPEPPLATPPEKATVGSKIFSTFIPFLKSKDPNDGTEQALLNELRALDEHLKDNGPFINGEKISAVDISLAPKLYHLKVALGHFKKWSVPEELTYVRDYMETLFSRESFLRTSAPDEQYIIAGWFPKVN

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
524	25			75	0.996473
526			75	25	0.996473
631	8	91			0.999807
748	10	90			0.90298
751			90	10	0.90298
768	10	90			0.90298
784	10		90		0.90298
786	10			90	0.90298
787		90		10	0.90298
829	11		88		0.923564
831			88	11	0.923564
832		88	11		0.923564
833	88			11	0.923564
842	11			88	0.923564
843		11		88	0.923564
844	11		88		0.923564
845		88		11	0.923564
846			87	12	0.992554
871	14			85	0.993533
872	85	14			0.993533
874	85			14	0.993533
976			90	10	0.90298
1057	14		85		0.993533
1059	85			14	0.993533
1068	16			83	0.994512
1069			83	16	0.994512
1093	25		75		0.996473
1095	25			75	0.996473
1096	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain