SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11541

Length: 1319 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11541

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23028	71/77
SustainPine v2.0	sp_v2.0_unigene80478	3/77

Source	Descriptions	Term	Type	Identity
AutoFact	Chain B, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gb\|AAM92710.1\| putative 40S ribosomal protein S3 [Triticum aestivum]	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	95%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-
Sma3	Ribosomal protein S3, eukaryotic/archaeal	IPR005703	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTN5

Fln msg:

Fln protein: MATQMSKKKKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPEGTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDKAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHTPKEEEEFAAKPVLGKETEILV*

Protein Length: 235

Fln nts: CGGGATCCAGAAATCTGCGCAACTGTAAGTAGACTGTTTAAAAAAGATTCATGTGACCTCACACAAATGGACTTGAAAACCCTAGCAAGGTATATTTGATATACACTAAAACCCTAAACCATATTGCCAGTATTGTGACCTGGTATTTTTATGTGTGTGTGTCGTTGTCGAATCCTTTTTCACAAACTGTTGATGCGGAAGAGTTGGGTTGACAAGCAGCGGGGTTGTCATTATATTTGGGTACTCTTTGCCTATCAATCTCGTGATCAATC_-_ATGGCAACCCAGATGAGCAAAAAGAAGAAGTTTGTTGCTGATGGAGTGTTTTTTGCGGAGCTGAATGAGGTTCTTACACGGGAGCTTGCAGAGGATGGATATTCTGGCGTGGAGGTTCGTGTCACCCCCATGCGTACAGAGATTATCATTCGTGCCACACGTACACAGAATGTTCTTGGTGAAAAGGGGCGAAGGATCAGGGAGTTGACTTCTGTTGTTCAAAAACGGTTCAACTTTCCAGAGGGTACTGTTGAACTTTATGCAGAGAAAGTCAACAACAGGGGTCTCTGTGCAATTGCACAAGCTGAGTCTCTGCGTTATAAATTGCTTGGAGGCCTTGCTGTGAGAAGGGCTTGCTATGGTGTATTGAGGTTCATTATGGAAAGTGGTGCAAAGGGTTGTGAGGTTATTGTGAGTGGCAAACTCAGGGCACAGCGTGCAAAATCAATGAAGTTTAAGGATGGCTATATGATTTCTTCTGGTCAACCTGTCAATGAATATATTGATAAAGCAGTTCGACATGTTCTTTTGCGCCAGGGTGTCCTTGGAATTAAAGTGAAAATAATGTTGGACTGGGATCCGAAGGGAAAGCAAGGTCCTACAACACCACTGCCCGACTTGGTCACCATTCATACTCCCAAAGAAGAGGAGGAATTCGCTGCCAAGCCAGTGCTTGGCAAGGAAACTGAGATACTTGTCTAG___GTCACTTTTAGTTCATTACATACAACATTTATATTTAAGCTTTTAATATATTCTTGAGCTATCCACATGAATTCAATTCCGGTCATGTGTAGACGACTATAATGTTGTTTGTGTCCTATAACTATAGTGTTGGATCAACGTCGTTCAATTTTTGACTTCTTTAACCTTCGATATGATTGTTGACGTGTTAAGGGAGGCTCTTTAGTTCCCAAGGTGTTAAAGCTTGGTGAATTGTAGTAGTTTCTCAAGAATGTTAGTTTATTTGGCAACGACCCTAATTGTTCATATTTGAAATTAATTAAAATTTCAAGCGTGGCATTTAATTTGCCAGTTTTCTCCTACATT

Fln Alignment:

Contig11541___MATQMSKKKKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPEGTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDKAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHTPKEEEEFAAKPVLGKETEILV
A9NTN5__________________MATQMSKKKKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPEGTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDKAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHTPKEEEEFAAKPQLGKETEILV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
845	10		90		0.90298
846		10	90		0.90298
848		90		10	0.90298
999	87			12	0.992554
1018	16	16		66	0.988813
1110		33	66		0.997452
1113		66		33	0.997452
1225	83			16	0.994512
1226			83	16	0.994512
1237	20			80	0.995493
1271	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain