SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11540

Length: 720 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11540 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18550	14/53
SustainPine v2.0	sp_v2.0_unigene20810	1/53
SustainPine v2.0	sp_v2.0_unigene46089	38/53

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl carrier protein n=3 Tax=Picea sitchensis RepID=A9NK69_PICSI	-	-	96%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	acyl carrier protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
163	12		87		0.992554
166	87			12	0.992554
344	20		80		0.995493
345		20		80	0.995493
348		80		20	0.995493
366	66		33		0.997452
531	33			66	0.997452
548	42			57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain