SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11528

Length: 1176 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11528

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15620	3/44
SustainPine v2.0	sp_v2.0_unigene29773	9/44
SustainPine v2.0	sp_v2.0_unigene60330	32/44

Source	Descriptions	Term	Type	Identity
AutoFact	Photosystem II 22 kDa protein, chloroplastic n=7 Tax=Solanaceae RepID=PSBS_SOLLC	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	chloroplast chlorophyll a b-binding protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	nonphotochemical quenching	GO:0010196	Biological Process	89%
Blast2go	membrane part	GO:0044425	Cellular Component	89%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	89%
Blast2go	response to karrikin	GO:0080167	Biological Process	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYQ2

Fln msg:

Fln protein: MAQSILPSRGVTASYVGGIAGFSQRPLPPPPALHVVRGLKIRLPNAAQLSWAPLGELRRGNVGGLKTRTAKTVALFRPKEKAAAPPKKGRAGRVAVPAEKPKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPAPESLIDPGKNFRSAVGLKESGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPITDIEPLVLFNVLFFLFAALNPGNGKFVTDVDEDEE*

Protein Length: 296

Fln nts: GTCTTTGCATCTCCACGCAGAGTACGCGGGGTGTCTGCAGTTAACACGACG_-_ATGGCGCAGTCGATTCTCCCATCTAGAGGTGTTACGGCCAGTTATGTAGGAGGAATCGCAGGGTTCAGCCAGCGGCCCCTACCGCCTCCGCCGGCATTGCACGTTGTCAGGGGCCTCAAGATTCGGCTGCCAAACGCCGCTCAGTTATCGTGGGCACCGTTAGGAGAGCTACGGAGGGGCAACGTTGGGGGGCTCAAGACTCGCACTGCAAAGACGGTGGCGTTGTTCCGGCCGAAAGAAAAGGCAGCCGCCCCGCCCAAGAAGGGGAGGGCAGGTCGAGTGGCGGTGCCCGCGGAGAAGCCCAAGGTGGAGGACGGCATCTTCGGGACCTCAGGAGGGATCGGTTTCACCAAGGCCAACGAGCTATTCGTGGGTCGTGTGGCCATGATCGGATTCGCAGCATCGCTGCTGGGAGAAGCGATAACGGGGAAGGGAATCCTGTCACAGCTAAACTTGGAGACGGGAATTCCTATATATGAGGCAGAGCCTTTGCTGCTCTTCTTTATTCTCTTCACGTTGCTGGGAGCCATAGGAGCCTTGGGCGACAGAGGGAAATTTGTGGACGATCCGGCTCCCGAGTCCCTGATAGACCCTGGAAAGAACTTCAGATCTGCAGTCGGCCTCAAAGAAAGTGGGCCTTTGTTTGGATTTACAAAAGCGAACGAGCTCTTCGTAGGAAGGTTGGCTCAGCTGGGAATCGCCTTCTCCATCATCGGCGAAATCATAACGGGGAAGGGAGCTCTGGCGCAGCTCAACATTGAGACGGGAGTCCCCATAACCGACATCGAACCCCTGGTGTTGTTCAACGTTTTGTTCTTCTTGTTTGCGGCATTGAATCCCGGAAACGGTAAATTCGTCACAGACGTAGATGAAGATGAAGAATGA___GAAGATCCATCAAAGAAACATGTGTTGCAAGGATTTCTAAATTTCTTTTAGATTTTCATTTGCTGTAAGGATGTTTGGTGAGAAAGATACAGACCACACAATCGATTTTCTTATCTTCAAAACCAATGACTGTACATCCTACGCAGATGAACATAAAGTGTCCACAACGAGTTATATGTCACCACAGAGGGAGCACATCACTCCCGTGAAAAGGTTCATAACACTTGAATTTCCTTTAAT

Fln Alignment:

Contig11528___MAQSILPSRGVTASYVGGIAGFSQRPLPPPPALHVVRGLKIRLPNAAQLSWAPLGELRRGNVGGLKTRTAKTVALFXXXXXXXXXXXXXXXXXVAVPAEKPKVEDXXXXXXXXXXXXKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDD-PAPESLIDPGKNFRSAVGLKESGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPITDIEPXXXXXXXXXXXXXXXPGNGKFVT
A9NYQ2__________________MAQSVLPSRSVR-SYVGGIAAFSQRPLPAPPALPVARGLRIRPPNAAETSWSPLRELPSANAAGLNARTANTVALFRPKEKAAAPPKKGRTGRVSVPEEKPKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEAPTPDSLVDPGKGFRSAVGLKDSGPLFGFTKSNELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPVSEIEPLVLFNVAFFLFAALNPGNGKFVT

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
412	33		66		1.0
414			33	66	1.0
415		33	66		1.0
705	76		23		1.0
710	11	88			0.999952
711		11	82		0.999919
713	82			17	1.0
714		86		13	0.999973
720	7	61	23		1.0
726	63		36		1.0
729	63		36		1.0
738	9		36	54	1.0
768		60	40		1.0
771	60		40		1.0
780	50		50		1.0
792			50	50	1.0
822		40		60	1.0
825		60		40	1.0
826	60		40		1.0
830		60	40		1.0
831		40		60	1.0
834		60	40		1.0
843		60	40		1.0
849			60	40	1.0
860		11		88	0.923564
861	11			88	0.923564
937		28	71		1.0
939	71			28	1.0
940			71	28	1.0
960		25		75	0.996473
961	25		75		0.996473
990		33		66	0.997452
991	33			66	0.997452
1077	33			66	0.997452
1079		66		33	0.997452
1081		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain