SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11527

Length: 915 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11527 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25676	6/77
SustainPine v2.0	sp_v2.0_unigene60289	69/77
SustainPine v2.0	sp_v2.0_unigene60414	1/77

Source	Descriptions	Term	Type	Identity
AutoFact	Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY	-	-	97%
FL-Next	sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine).	-	-	97%
Blast2go	ole e 5 olive pollen allergen	-	-	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	0.0	-
Sma3	Superoxide dismutase, copper/zinc binding domain	IPR001424	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
571		13		86	0.999973
828		25		75	1.0
830	75	16	8		0.99999
834		11		88	0.923564
835	11	88			0.923564
836			88	11	0.923564
840	12			87	0.992554
841		12	87		0.992554
842	12		87		0.992554
874	14	85			0.993533
877		85		14	0.993533
878	85			14	0.993533
883		16	83		0.994512
889	20			80	0.995493
893			80	20	0.995493
907	25			75	0.996473
909	25	75			0.996473
910	50	25		25	0.995533
911		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain