SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11523

Length: 1848 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11523

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16948	14/81
SustainPine v2.0	sp_v2.0_unigene27563	67/81

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=4 Tax=rosids RepID=A9PEC4_POPTR	-	-	72%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	3-ketoacyl- synthase	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	86%
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	86%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	86%
Blast2go	cuticle development	GO:0042335	Biological Process	86%
Blast2go	response to light stimulus	GO:0009416	Biological Process	86%
Blast2go	response to cold	GO:0009409	Biological Process	86%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	86%
Blast2go	fatty acid elongase activity	GO:0009922	Molecular Function	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVH1

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: FLLQFLYLLLFEQWVKKKGLSNRGLPDFLLTVKLKYVKLGYQYLTKYFLSFLLVPLLVGVGLEVGRIGVDDVVLLWQALEFNLVHALSCTGLLVFVSTVYIMSRPRAVYLVDYSCYRPPDSCRVPFATFMEHSRLFKYFDQKSLDFQMKILERSGLSEETCLPPALHYIPPSPTMSASRDEAQLVIFSAMDDLFSKTGLKPKDIDILVVNCSLFCPTPSLSAMVINRYKMRGNTMSFNLSGMGCSAGVIAVDLANNLLQVHGNSNAIVVSTETITPNWYRGNQRSMLLPNCLFRMGGAAILLSNKRNERSRAKYRLVHAVRTHKGADDKAYRCVYQEEDAQGKVGMSLSKDLMAIAGDALKANITTLGPLVLPVSEQLLFLFSVLMKKFINPKRKSYIPDFKQAFEHFCIHAGGRAVIDELEKNLQLSPEHVEPSRMALHRFGNTSSSSIWYELAYIEAKGRMRRGDRVWQIAFGSGFKCNSAVWKCLRTVKTPTQGPWSDCILRYPVVIPDVVKM*

Protein Length: 518

Fln nts: CTCAAGTTGTCTGGAGGAGGCGTATTTGATTGTGCTGCCTCCGTGAAGACCAGTTGGTTGAACAGTTTCTATCAGGGGATGTTCTTTTTCTTCTATAAGAATGCAAGGTTGCTCAATGTCTAGTGCCAAGTTAGAGCGACTTTGATGCCAGGATTGATGAATTGGGTATCTGTATCTGCTTCTGGTTCTGCATTGTCTTAGTTGCAATTTAGTTTTTGCTTCAGTTTTTGTATTTATTGTTGTTTGAGCAATGGGTGAAGAAGAAGGGTCTGAGTAATCGTGGCCTGCCTGATTTTCTCCTCACTGTGAAGTTGAAATACGTGAAGCTTGGATACCAGTATCTGACTAAATATTTTCTGTCTTTCCTGCTGGTTCCGTTGCTGGTTGGAGTGGGCTTGGAGGTTGGAAGAATTGGGGTGGACGATGTAGTTTTGCTATGGCAAGCTCTGGAGTTCAATCTTGTTCATGCATTGTCATGTACAGGGCTTCTGGTTTTTGTATCGACTGTGTATATAATGTCGAGGCCTCGTGCGGTGTATTTGGTGGACTATTCCTGTTACCGTCCCCCAGATTCATGCAGAGTTCCTTTTGCAACTTTCATGGAGCATTCCAGGCTGTTCAAGTATTTTGACCAGAAAAGCCTGGATTTTCAGATGAAGATTCTGGAAAGGTCTGGTCTTAGTGAAGAGACTTGCCTCCCCCCTGCTCTGCATTACATTCCCCCTAGTCCCACAATGTCGGCTTCCCGCGACGAGGCCCAGCTCGTCATATTTTCTGCCATGGACGATCTGTTCTCCAAAACGGGACTCAAGCCCAAGGACATTGATATTCTTGTTGTGAATTGCAGTCTTTTCTGCCCGACCCCGTCGCTTTCAGCCATGGTGATTAACAGATACAAAATGCGCGGGAACACCATGAGCTTTAATTTATCTGGCATGGGCTGCAGCGCGGGGGTCATAGCAGTGGATCTGGCGAACAATCTTCTGCAAGTCCATGGGAATTCGAATGCTATTGTGGTGAGCACCGAGACCATTACGCCGAATTGGTACCGCGGGAACCAGCGATCCATGCTGCTCCCAAATTGCTTGTTCCGAATGGGCGGCGCCGCCATTTTGTTATCCAACAAACGCAACGAACGGAGCCGCGCGAAGTACAGGCTCGTCCATGCGGTCAGAACTCACAAAGGCGCAGACGACAAGGCATACCGCTGCGTCTATCAAGAAGAGGACGCGCAGGGCAAAGTCGGGATGTCGCTCTCCAAAGATCTCATGGCGATCGCCGGCGACGCGCTCAAGGCCAACATAACGACACTCGGCCCCCTGGTTCTGCCGGTTTCCGAGCAGCTCCTCTTTCTTTTCTCCGTCCTCATGAAAAAATTCATAAACCCGAAGCGAAAATCCTACATCCCCGACTTCAAGCAGGCCTTCGAACATTTCTGCATCCACGCCGGCGGGCGCGCCGTAATCGACGAGCTCGAAAAAAACCTGCAGCTCTCCCCCGAGCATGTCGAGCCCTCGCGCATGGCGCTTCACAGGTTCGGCAATACCTCTTCCTCGTCCATCTGGTACGAGCTCGCCTACATCGAGGCCAAGGGCAGGATGCGCCGAGGCGACCGCGTGTGGCAGATCGCTTTCGGCAGCGGATTCAAATGTAACAGCGCCGTCTGGAAGTGTCTGCGCACTGTGAAAACTCCGACCCAGGGGCCATGGTCGGATTGCATCCTCAGATACCCCGTCGTTATCCCCGATGTTGTCAAGATGTAA___TTGGGAAATGTATTATTCATTCATGGCTGCCTGTCTGACTGAGACTCAACCCTATTATTATCATTATTATTGTTATTAATACATT

Fln Alignment:

Contig11523___RGLPDFLLTVKLKYVKLGYQYLTKYFLS-FXXXXXXXXXXXXXXXXXXDDVVLLWQALEFNLVHALSCTGLLVFVSTVYIMSRPRAVYLVDYSCYRPPDSCRVPFATFMEHSRLFKYFDQKSLDFQMKILERSGLSEETCLPPALHYIPPSPTMSASRDEAQLVIFSAMDDLFSKTGLKPKDIDILVVNCSLFCPTPSLSAMVINRYKMRGNTMSFNLSGMGCSAGVIAVDLANNLLQVHGNSNAIVVSTETITPNWYRGNQRSMLLPNCLFRMGGAAILLSNKRNERSRAKYRLVHAVRTHKGADDKAYRCVYQEEDAQGKVGMSLSKDLMAIAGDALKANITTLGPLVLPVSEQLLFLFSVLMKKFINPKR-KSYIPDFKQAFEHFCIHAGGRAVIDELEKNLQLSPEHVEPSRMALHRFGNTSSSSIWYELAYIEAKGRMRRGDRVWQIAFGSGFKCNSAVWKCLRTVKTPTQGPWSDCILRYPVVIPDVVKM
A9NVH1__________________RRLPDFLQSVNLKYVKLGYHYLISHAVYLFSVPVLLLAFSAEIGSLSQQDLWRLWEQPHFDLTTMLTFSGATVFMLCLYFMSQPRSVYLVDFACFKPSDELKVSKEEFISLAKKSGHFDDASLEFQKRILERSGVGDETYLPKAVMGPGLCSTMKEGRAEAEMVMFGALDELFEKCKVRPKDVGILVVNCSLFNPTPSLSAMIINHYKMRGNILSFNLGGMGCSAGIISLDLARDMLQAHPNSYAIVVSTEMITFNWYTGAERSMLMPNCFFRMGGAAILLSNKRRDRRRAKYSLSHIVRTHKGADDRSFRCVYQQEDDKRKKGLSVSKDLLEIGGHALKANITTLGPLVLPLSEQLLFLATLIGRKVLKMDHVKPYIPDFKLAFEHFCIHAGGKTILDELQNNLGLTNKHMEPSRMTLHRFGNTSSSSLWYELAYMEAKHQIKKGDRVWQIAFGSGFKCNSAVWKTLRTVKRSTKNPWLDCVDRYPVEIPDVQKM

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
1355	27			72	1.0
1358		12		87	0.992554
1359	12	87			0.992554
1361		87		12	0.992554
1373	87	12			0.992554
1375	87			12	0.992554
1376	87			12	0.992554
1408	16	83			0.994512
1409		83		16	0.994512
1410		83		16	0.994512
1423			60	40	1.0
1424			60	40	1.0
1444	33	66			0.997452
1447		66		33	0.997452
1448			66	33	0.997452
1546		50		50	1.0
1673	10			90	0.90298
1678			88	11	0.923564
1686		12		87	0.992554
1745	10	90			0.90298
1751			90	10	0.90298
1752	11			88	0.923564
1753		11		88	0.923564
1754	11		88		0.923564
1756		88		11	0.923564
1779		14		85	0.993533
1782	14			85	0.993533
1826	25			75	0.996473
1827		33		66	0.997452
1830		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain