SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11517

Length: 1140 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11517

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15913	79/83
SustainPine v2.0	sp_v2.0_unigene23335	1/83

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll a-b binding protein type 2 member 1A, chloroplastic n=37 Tax=Spermatophyta RepID=CB2A_PINSY	-	-	90%
FL-Next	tr=Chlorophyll a/b binding protein; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	99%
Blast2go	chloroplast light harvesting chlorophyll a b binding partial	-	-	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q93XK4

Fln msg:

Fln protein: MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK*

Protein Length: 276

Fln nts: CCGAGGAGATTCGGAAACGATAGGAGCTGAAATTATTTGATCTGCGGTTGCTCTATATGTTGAGCTGATACATTTCAAAGGGCGGAGAAGAGAACTGGTACAAACTAAACTAATCTTCCGTTTGTGCGCCTACTGCTGCAACA_-_ATGGCAAGCTGCGGGATCGGGTCGTGCGCTTTCGCTGGGGGACAGATATCATCGCTGAAGCCTCACACCAACCAGTTGCTGGGAGTCGGCGCCGGGGTTCATGGCGAGGCGCGAGTGACGATGAGGAAGGCGGCCACCAAAAAGGTGTCAGTTTCAGCGAGCACATCGCCATGGTATGGGCCGGACCGGGTACTCTACTTGGGGCCTTTTTCCGGAGAGCCACCATCCTACTTGACCGGTGAGTTCCCCGGTGACTACGGGTGGGACACCGCGGGGCTTTCGGCAGATCCAGAGACTTTTGCGAAGAACAGAGAGCTGGAAGTGATCCACTGCCGGTGGGCAATGCTGGGCGCTCTGGGTTGCGTTTTCCCGGAGCTTCTGGCGAGAAATGGAGTAAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGAGCTCAGATTTTCAGCGAGGGAGGGCTTGACTACCTGGGAAACCCTAGCTTGGTTCACGCGCAGAGCATTCTTGCAATCTGGGCATGCCAGGTCATCCTCATGGGCGCCGTGGAGGGATACCGTATTGCGGGCGGTCCTCTGGGAGAGGTGACCGACCCCATCTACCCCGGGGGCAGCTTCGACCCGCTGGGACTTGCGGACGACCCTGACGCTTTCGCGGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGTTGGCCATGTTTTCTATGTTCGGATTCTTCGTGCAGGCCATTGTCACCGGGAAAGGACCCATCGAGAACCTCGCTGATCACCTGGCTGACCCCGTTAACAACAACGCCTGGGCATACGCCACCAACTTCGTCCCCGGCAAATGA___AATCCGCCACTAGCACAAGTATGATGCTCTGCGATCATCTTTTGAGCCGGCCGGGGGCCGGGCCTGGCTTATTTCTTGTCTATTCTGTTTGTCCTTCCTGTGTTTTAATGCAACGAATATTTTTGTAGACGTTGTTAATTTGATTTCAGTCTTCATTTCCAATGATTACATT

Fln Alignment:

Contig11517___MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK
Q93XK4__________________MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNNAWAYATNFVPGK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
436	28		71		1.0
437	71			28	1.0
439	71			28	1.0
442	12			87	0.992554
443	12			87	0.992554
494	11		88		0.923564
495	11	88			0.923564
496			88	11	0.923564
497		88	11		0.923564
702	6		93		0.999364
804	10		90		0.90298
805	90	10			0.90298
807			90	10	0.90298
824		11	88		0.923564
825	11		88		0.923564
837		12		75	0.975346
838	25			75	1.0
1015	25		75		1.0
1017	25	75			1.0
1018			71	28	1.0
1019			71	28	1.0
1095	20		80		0.995493
1100	80			20	0.995493
1103	33	33	33		0.997753
1104			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain