SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11510

Length: 1175 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11510

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23531	88/90

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lactoylglutathione lyase, putative n=1 Tax=Ricinus communis RepID=B9SKE3_RICCO	-	-	1.96182e-44	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	metallothiol transferase fosb	-	-	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN94

Fln msg:

Fln protein: MGKEEVQISRPSPLPLLSLNHVSFVCKSVAASTKFYETILGFQVVKRPASFDFEGVWLFNYGVGIHLLQCKPWDDIPKKSEINPRDNHISFQCPDIVSVEKNLQELKIKYEKRVVEDEGLFVNQLFIHDPDGYMVEICNCENLPVIPLSLPPYSVKSSSLGFDQKRESRSEIDIVPTIAAAQKDFLNRKKMIEATGRENRFPSKAHDKMPFFLDIIDFYL*

Protein Length: 222

Fln nts: CGGGAGAACAAGCCAAGACTGTGAGGAAGCAGGTAGAGGTAGAGTTGATCCATCAGTCCATGGGAATGCTGGAGAAGTAAAGAAAAAGGAATCGCAGGATACG_-_ATGGGAAAAGAAGAAGTTCAGATTTCACGTCCCTCCCCATTACCTTTGTTATCTCTGAATCACGTTTCATTCGTTTGTAAATCTGTGGCGGCTTCCACCAAATTCTATGAGACTATTCTTGGATTCCAGGTTGTGAAGAGGCCAGCTTCATTCGATTTTGAAGGAGTTTGGTTATTCAATTACGGTGTGGGGATTCATCTGTTGCAGTGCAAGCCTTGGGATGATATTCCTAAAAAATCAGAGATCAATCCCAGAGATAACCATATCTCTTTTCAGTGCCCAGATATTGTTTCAGTGGAAAAGAATCTCCAAGAATTGAAAATAAAATATGAAAAGCGTGTAGTGGAGGATGAAGGCCTGTTCGTGAACCAACTTTTCATTCATGATCCTGACGGTTACATGGTCGAGATCTGCAACTGTGAGAATCTCCCTGTTATTCCCCTCTCTCTCCCGCCATATTCTGTAAAGTCAAGCTCTTTGGGTTTTGATCAAAAGAGAGAGAGCCGCTCAGAAATCGATATTGTTCCAACCATTGCTGCTGCACAAAAGGACTTTCTGAATCGAAAAAAGATGATTGAAGCCACTGGACGAGAGAATCGGTTCCCATCAAAGGCACATGATAAAATGCCATTTTTCCTGGACATCATAGATTTCTATCTCTGA___AGGCAGCCACAGCCATAGATTAGTAGAGATACTAGGGGACGCACAGTTTGGTTCTGTGATCTGTTATGCTACTGGTATTTAGTAATTACTGGGCGATTTCCTCCCTCTGGACGTGCAAGGAATTTGGCTAAAACTTTTATAAGTTTGTAGTCTTTGAAATAATCACGAGGTTGTTTTAAGTTAGTAGTCTTTGAAATAATCACTAGTTTTAGTATTGTTTGTGTGGTATTTCATAATTCCCATGTTTTGGGGGCTCTGAATGCTGAGTCAGGGGTGGCTTACTATTTAAGGTTGTGTGTAATTTGTTGTGCATCAGTTGGAACTTTCTAATATGCTGCTTTCCAACTGTAATGCAACGGGCATTTTAATGCTGCTGCTGTTTCATAAAATTTCCAGAAATTTCAACATT

Fln Alignment:

Contig11510___MGKEEVQIXXXXXXXXXXXNHVSFVCKSVAASTKFYETILGFQVVKRPASFDFEGVWLFNYGVGIHLLQCKPWDDIPKKSEINPRDNHISFQCPDIVSVEKNLQELKIKYEKRVVEDEGLFVNQLFIHDPDGYMVEICNCENLPVIPLSLPPYSVKSSSLGFDQKRESRSEIDIVPTIAAAQKDFLNRKKMIEATGRENRFPSKAHDKMPFFLDIIDFYL
A9NN94__________________MGKEEVQISRPSPLPLLSLNHVSFVCKSVKASTKFYETILGFQVVKRPSSFDFEGVWLFNYGVGIHLLQCKPSDDIPKKSVINPRDNHISFQCPDIFSVESKLQELDIKYEKRIVEDDGLFVNQLFFHDPDGYMVEICNCENLPVIPLKLV---------------QSRSEIDIVPTL---RKEFRNRKKEI---GRENGFPSKALDKMPIFLDIIDFYL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
625	11	11		77	0.968132
626		11	66		0.999999
627	22		11	66	0.999999
629		66		33	1.0
656	16			83	0.994512
657		16		83	0.994512
658	16			83	0.994512
659		83		16	0.994512
668	83		16		0.994512
669	83			16	0.994512
684	10	90			0.90298
687		90		10	0.90298
909		16	83		0.999991
910	16			83	0.999991
917	10			90	0.90298
919	10			90	0.90298
930	10	90			0.90298
932		90		10	0.90298
934	90			10	0.90298
948		10		90	0.90298
950			90	10	0.90298
964	81			18	0.999994
983		12	87		0.992554
984	12			87	0.992554
1039	10		90		0.90298
1040	10		90		0.90298
1139	14		85		0.993533
1142			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain