SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11509

Length: 1148 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11509

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23774	1/74
SustainPine v2.0	sp_v2.0_unigene25624	26/74
SustainPine v2.0	sp_v2.0_unigene60356	46/74

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase 3 n=1 Tax=Actinidia eriantha RepID=C0IRG2_ACTER	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNJ5

Fln msg:

Fln protein: MASLSMQSCFLILAQCFWASHCAQFNDIFEPSWATDHVMYEGELLKLKLDNISGAGFASKATYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGKREQRIYLWFDPTADFHSYSFLWNHNQVVFFVDSVPIRVFPNNERLGVPYPKSQPMRVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNAESGVNETGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF*

Protein Length: 286

Fln nts: ACACTGGTTCTGTTGGGTAGCAGCGTAGTGCAGATAAGCTGTTGTTAAT_-_ATGGCTTCTTTGAGTATGCAGAGCTGCTTCTTAATTCTGGCTCAATGCTTCTGGGCATCCCATTGTGCACAGTTTAATGATATCTTCGAGCCCAGCTGGGCGACAGATCATGTTATGTATGAGGGAGAGCTGTTGAAGCTTAAGCTGGACAATATTTCCGGGGCTGGCTTTGCTTCCAAGGCAACATATTTGTTTGGAAAAGCAGGGGCACAGATTAAGCTCGTTCCAGGTGACTCTGCAGGCACAGTTACTGCTTTTTATATGTCTTCTGAGGGGACTCTGCACGACGAATTCGATTTCGAATTCTTGGGAAATGCTTCGGGTGAGCCTTACATTGTGCAGACTAATATCTACTCCAACGGCACTGGCAAGAGGGAACAACGGATTTACCTCTGGTTCGACCCTACGGCAGATTTCCATTCCTATTCTTTTCTGTGGAACCACAACCAAGTTGTATTCTTTGTGGATAGTGTTCCGATTCGGGTATTCCCCAACAACGAGCGGCTGGGAGTCCCATATCCGAAAAGCCAGCCGATGAGAGTATCCTCCTCAATCTGGAATGCAGACGACTGGGCTACACAAGGCGGGCTGGTGAAGACAAACTGGAGCCATTCTCCTTTCATCTCCACTTACAAAAGCTTCGACATTGATGCAAACGAATACGGACTGAATGCAGAATCAGGAGTTAATGAGACTGGAAGTAAGTGGTGGGATATGCCCTCTTATTCTTCCCTCTCTCCACAGCAAAGGCGAATGCTCCGATGGGTGCATCGGAACTACATTATCTATGACTATTGCAAAGATTCAACAAGGTTTTCCACTTCGCCACCTGAGTGTGCAGGCCTCCGTTTCTAG___TCCATTATGTTTTAACATTTCTGAGTGTAGAGCCCTGCTTGCTCAGCTCAATTTTGCTGTTGGTGCTGGCAATGCAACTGATGAATCTCTATGATGTTTCCACACAGACAAAATCATGGTACTATCTCAATGATGCCTCTGGGGATAGCTTCTGCCAGTCATTCTCCTAATGTGTAATATGAAGCCGGAATGTTTATATACATTCTGGCATGATCAGGAATAATGCAATCTTTTTTTTCCATCG

Fln Alignment:

Contig11509___MASLSMQSCFL-ILAQCFWASHCAQFNDIFEPSWATDHVMYEGELLKLKLDNISGAGFASKATYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGKREQRIYLWFDPTADFHSYSFLWNHNQVVFFVDSVPIRVFPNNERLGVPYPKSQPMRVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNAES-GVNETGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF
A9NNJ5__________________MACVSKQRCFFFILALCFWASNCAEFNDIFEPSWAMDHVMYEGELLKLRLDNISGAGFSSKAAYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGNREQRIYLWFDPTADFHSYSFLWNHNQVVFLVDSVPIRVFPNNERLGVPYPKKQPMKVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNGESRGVNENGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
700	33		66		0.997452
704		66		33	0.997452
815			86	13	0.999973
953	10	90			0.90298
957	90			10	0.90298
1024			85	14	0.993533
1032	16	83			0.994512
1036	83			16	0.994512
1064		28	71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain