SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11502

Length: 1024 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11502

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60493	44/45

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	anthocyanidin synthase	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMM4

Fln msg: your sequence is shorter than subject: 228 - 266

Fln protein: NGQLEWEDYYFHLLWPEHSRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILSTLSLDLGVEEDRMERVLGGESLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLYNDGKWVTAKCIPGALIVHIGDQVEILSNGKFKSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEVVDEQNPPLFPAKTFKQHTDHKLFKKAQAQAEAQAAKKLEQST*

Protein Length: 229

Fln nts: CCAATGGTCAGCTTGAATGGGAAGATTACTACTTCCACCTGCTCTGGCCTGAACACAGCAGAGACATGACCACTTGGCCTAAACATCCCCAAGAATACATCGAAGTGACAGACGCCTACGGAAGGGAGATACGGAAGCTCGTAACCAAAATCCTGAGCACGCTTTCATTGGATCTGGGCGTGGAGGAAGACAGAATGGAGCGCGTGCTCGGCGGTGAAAGTCTGGAAATGCAATTGAAAATAAATTACTATCCCCGCTGTCCACAACCAGAGCTCGCTCTAGGAGTCGAGGCCCACACCGACATCAGTGCGCTCACATTCCTTCTGCATAACATGGTGCCCGGCCTTCAGCTCTACAATGACGGAAAATGGGTCACCGCCAAATGCATTCCCGGCGCCCTCATCGTCCACATTGGTGACCAAGTTGAGATATTGAGTAACGGGAAATTCAAGAGCGGGCTGCACAGAGGGCTGGTGAACAAAGAGAAGGTGAGAATTTCATGGGCGGTGTTCTGCGATCCGCCAAAAGACGCCCTAATCGGACCCATGAAGGAAGTGGTGGACGAGCAGAATCCTCCATTGTTTCCGGCGAAAACCTTCAAACAGCACACCGATCATAAGCTTTTCAAGAAGGCCCAAGCCCAGGCGGAGGCCCAAGCCGCCAAGAAGCTCGAACAGTCTACTTGA___AGCCGTACTCTGTATATGGTCGAGCCCAGCCAACCCAACCCATTGTCAACCCGAGTCTATTTAAGCCTTTCTCTAGTTTATATATGAGTTGATTGAATTAGGGAAAATATATTAAAAGATCAAAATTTACTAGCATCAGAACTGAATATATCTATGTGTGTTTCCTAAATGCTTCGGAGCAGCATTACATAGATAAACAGATATATATATTGTTGTACACAATTTGGTTTGCAATTTTCAGTTTCAATATGTGTCATTTCACACAGTTATTTGAAGTCCCTGGTTGAACCCAACTCAATCACATGTAGAATTCTTTTAATTTGAGAGGTATGTTTTCC

Fln Alignment:

Contig11502___NGQLEWEDYYFHLLWPEHSRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILSTLSLDLGVEEDRMERVLGGESLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLYNDGKWVTAKCIPGALIVHIGDQVEILSNGKFKSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEVVDEQNPPLFPAKTFKQHTDHKLF
A9NMM4__________________SGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSSDLGVEEERLERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFYEGKWVTAKCIPGALIVHIGDQVEILSNGKFTSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEVVDESNPPLFPAKTFKEHTDHKLF

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
567	50		50		1.0
568		50		50	1.0
569	50		50		1.0
570			50	50	1.0
775		16	83		0.999991
778		10	90		0.90298
814	16			83	0.994512
815	16			83	0.994512
817		83		16	0.994512
824		80		20	0.995493
836	25			75	0.996473
839		75		25	0.996473
895	33			66	0.997452
950	75		25		0.996473
1019	33		66		0.997452
1020		33		66	0.997452
1021	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain