SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11501

Length: 1424 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11501

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19716	103/108
SustainPine v2.0	sp_v2.0_unigene61189	4/108

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NKT0_PICSI	-	-	91%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	20s proteasome beta subunit pbg1	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	response to salt stress	GO:0009651	Biological Process	89%
Blast2go	peptidase activity	GO:0008233	Molecular Function	89%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	89%
Blast2go	proteasome complex	GO:0000502	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-
Sma3	Proteasome endopeptidase complex, beta subunit	IPR016295	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT0

Fln msg:

Fln protein: MLAAGRKDEKNEQALKNHVGHPQTGKDCAFTLLGSPITHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIIRYLDELILYDNMWDDGNSLGPKEVHNYLNRLMYNRRNKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAMKTHWELEAFKNPATGAVGSW*

Protein Length: 264

Fln nts: GGGGTTTTCTTGGCGGAAGAGCAACGTGCGTTACTACAGTTCTGAGTTATCGATCTGAGTTTTGGGCAGCAACCATTCTGGATACAGTTGTTTGAGCTCTCTTAATAGAGTTGTAAAG_-_ATGTTGGCAGCGGGTCGGAAGGATGAAAAGAATGAGCAGGCTCTGAAAAATCACGTGGGTCATCCGCAAACAGGCAAAGATTGCGCATTTACACTTCTCGGCTCTCCTATCACTCATACCCAGTATCCATATGTAACTGGTACATCAGTCTTGGGTATTAAGTATAAAGATGGAGTTTTGCTGGCATCAGACATGGGAGGATCGTATGGATCTACCTTACGTTACAAGAGTGTCCAGAGATTGAAGCCTATTGGTAAACACACTCTCTTGGGTGCTGGTGGAGAAATAAGTGATTTCCAGGAGATAATACGTTATCTTGATGAACTCATACTTTATGACAACATGTGGGATGATGGCAACTCCTTGGGTCCTAAAGAAGTACACAACTATCTCAATCGGTTGATGTACAACAGGCGAAATAAATTCAATCCTTTGTGGAACACACTTGTTCTGGGTGGAGTCAAGAATGGTCAGAAATACCTGGGCACGGTCAATATGATAGGGGTGCATTATGAGGAGAACCATGTGGCTACTGGATTTGGTAATCATCTTGCTAGGCCAATTTTCCGTGATGAATGGCACGAGGATATGACCTTTGAAGAAGGTGTCAAGCTTCTGGAAAAGTGCATGCTTGTGCTTTTATATCGTGATCGGTCAGCTGTTAACAAACTACAGATAGCAAAGATCACAGAAGAAGGAGCCACAATTTCTGAACCATATGCTATGAAAACACATTGGGAACTTGAGGCATTCAAGAATCCAGCTACAGGAGCTGTAGGTTCGTGGTAA___TGAGAAACAGTGGTTTTGCAGTTGTCTCAATTGCCGAGACTAAATGAAGATTTCAATATACTTCAAATATGAATGGCCAGGCTGAAATCCGAGTTCTTACTCATTTTTAAGTATCAAACACAGGCCCCTTTAGTTATCCTGGAGTCGGATGTTGAAGCAAATATGAGTTAGCTGCATTTCAATTTATTTATGTTGAAGGACATCATAAAATGATAGAGATTTCGAATGGTCAACTTTGTAATGCTTTTAATAATTATATTTTATTTCTTGAGTTAAACATGAAGCTTTAAATGCTAATTTTAATAACATTTTCAACGACATAAAAATGGGTTCTTGTTCACTCTGCAGGAATCTATTCACTAGTAGGAACATATATTGAACATTTGCTTTGGTAGGCTCTGTTTTGTTGTTAAACGAGATGTCTCCCTAGCTTAGGCTTTGGGGATGAAACGATTGTAGAATGACATCTATAAGACATAGATGTGTAATGAATCACATTCCACACATGGCATTATGC

Fln Alignment:

Contig11501___MLAAGRKDEKNEQALKNHVGHPQTGKDCAFTLLGSPITHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIIRYLDELILYDNMWDDGNSLGPKEVHXXXXXXXXXXXXKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAMKTHWELEAFKNPATGAVGSW
A9NKT0__________________MLAAAQKDEKKDQALKNHVGHPQTGRDCPFTLLNSPISHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIVRYLDELILYDNMWDDGNSLGPKEVHNYLNRLMYNRRNKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAIKTHWELEAFKNPATGAVGSW

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
531			66	33	0.997452
533		66		33	0.997452
654	16		83		0.994512
807		88		11	0.923564
808	88			11	0.923564
1064	10		90		0.90298
1067	88			11	0.923564
1068	88			11	0.923564
1072	12		87		0.992554
1073	87	12			0.992554
1074	12		87		0.992554
1079	14	85			0.993533
1094	16			83	0.994512
1095		16		83	0.994512
1096	16			83	0.994512
1097	83			16	0.994512
1150	10		90		0.90298
1152	10			90	0.90298
1167	12			87	0.992554
1168		12		87	0.992554
1169	12			62	1.0
1184	85			14	0.993533
1331	16			83	0.994512
1332	16	83			0.994512
1333		83		16	0.994512
1334		83	16		0.994512
1393	16			83	0.994512
1394	83	16			0.994512
1397			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain