SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11500

Length: 1696 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11500

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6059	109/112

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-binding protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	heterogeneous nuclear ribonucleoprotein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	77%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A839

Fln msg:

Fln protein: MDSDHGKIFIGGISWDTSEERLKDYFGQYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQEKHTIDGRTVEAKRVVPRDEQQNVQRNSNMAGPRTKKIFVGGLAPTVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTRGSAGRGASFGAPYMQSYGPTPVGAYGTRPPIAGTGYPPYAAAPGYGPTGYGSTAGYGTSMNGGYGATPVYAAAAGYAGGAAGSYGAGFSNAPGSTTYGTGTAGYAATPVPAPYGNAPVARTGWGATAGSPGYAAAGAGSWGSAAPSGQPAGAAPGYGYASSDAGYGSRGDSGYMQASSGYGPPSGGANAGGYPGGYGDTHGNAGYGNS*

Protein Length: 397

Fln nts: ATCCTCGAAGAAGGCAGTTTCGGGAGTGAAGCTTTTTTATTTTTATTTTGAAAGGAGCA_-_ATGGATTCTGATCATGGCAAGATTTTTATCGGAGGAATATCATGGGACACCTCTGAAGAGAGGCTCAAGGATTATTTCGGTCAATACGGCCAGGTGGTAGATGTTGTCATTATGAAAGACAGGACTACTGGTCGAGCAAGAGGCTTCGGCTTTGTGGTCTTTGGAGACCCTTCTGTTGCAGATCGAGTTATTCAGGAGAAGCACACTATCGACGGCAGAACAGTTGAAGCTAAAAGGGTTGTACCAAGGGATGAACAACAAAATGTTCAGAGGAATAGCAATATGGCAGGACCTAGGACTAAGAAGATTTTTGTTGGTGGGTTAGCACCCACTGTTACTGAGGATGACTTCAGAAAGTATTTTGAGCAGTTTGGTAATATAACAGATGTAGTTGTAATGTATGATCACACTACACAAAGGCATCGTGGTTTTGGGTTCATTACTTATGATTCGGAGGATGCAGTGGACAAAGTTCTTCAGCAGACATTTCACCAGCTCAAGGAAAAGACTGTGGAGGTGAAGCGGGCCATTCCCAAGGACATGTCTCCAGGAAATACAAGAGGTTCTGCAGGACGTGGAGCTAGTTTTGGTGCACCATATATGCAAAGCTATGGACCAACTCCTGTTGGGGCTTATGGAACACGCCCGCCTATTGCAGGTACGGGATATCCTCCATATGCTGCAGCACCTGGCTATGGACCTACTGGGTATGGAAGTACAGCAGGGTATGGGACAAGTATGAATGGTGGATATGGTGCAACACCTGTATATGCAGCAGCTGCAGGCTATGCAGGAGGTGCAGCAGGATCTTATGGAGCTGGATTTAGCAATGCTCCTGGTAGCACTACGTATGGTACTGGAACTGCTGGTTATGCTGCTACTCCTGTACCTGCTCCCTATGGAAATGCTCCTGTTGCCAGAACTGGCTGGGGAGCCACTGCTGGCTCCCCAGGATATGCAGCAGCAGGAGCAGGTTCTTGGGGTTCAGCAGCTCCTTCAGGACAGCCTGCTGGAGCTGCTCCTGGTTATGGATATGCAAGTAGTGATGCTGGCTATGGCAGCAGAGGTGACAGTGGTTACATGCAAGCAAGCAGTGGTTATGGGCCTCCTTCTGGCGGAGCTAATGCAGGAGGCTATCCAGGAGGATATGGTGATACACATGGTAATGCTGGTTATGGAAACTCATAG___AAAACTACCCATATTTGAATAGTGCTGTAGTGCCATGGGCATGGAAAGAGAAGACTGGTACAATTGTAATGCTGTCGTTATTGATGGATCTAGTTATTTGTAATTGCAGTATATTTATTTTCTCCAAATTACTATGAAAAGGAGATTATTTGAACTACTATTACTCTCTTGTATCTTTCTCTTAAAAATGTTTTTGTAGTGCCAGCTAATATCTTTGCAGGTGATAGCTTTAAGAGAAGAGTTTGCAGGCATTGGCATAAGCCATTTTATGTGGCTCTGCTTTTGCAACCATGTTGTACGAAATCTTAGGTTAGATTTCAGGAGACTAGTTAGCTCAGTAGGGATTCACACCTCACTGATGTGGGTTTTGGCACTTCTAAGAATACCTTGAAGTTTCCTATTTTTGAAGGGTTGTTGTAGGCATTTAAGTTTCACAAATTATTGTAAAC

Fln Alignment:

Contig11500___MDSDHGKIFIGGISWDTSEERLKDYFGQYGQVVDVVIMKDRTTGRARXXXXXXXXDPSVADRVIQEKHTIDGRTVEAKRVVPRDEQQNVQRNSNMAGPRTKKIFVGGLAPTVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTXXXXXXXXXXXXPYMQ-SYGPTPVGAYGTRPPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNXXXXXXXXXXXXXXXXXXXXXXXXXXFSNXXXXXXXXXXXXXXXXXXXXXXXXNAPVARTGWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQXXXXXXXXXXXXXXXXXXXXXXDTHGNAGYGNS
D5A839__________________MDSDHGKIFIGGISWDTSEDRLKDYFGNYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQEKHTIDGRAVEAKRVVPRDEQQNVQRTSNMAGPRTKKIFVGGLAPTVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTRGSAGRGASYGAPYMQGGYGPTPVGAYGARPPIAGTGYPPYGAAPGYGPTGYGSTPGYGTSMNGGYGATPVYAAAAGYAGGAAGSYGAGFSNAPGSNTYGSGTAGYAATPVPAQYGNAPVARTGWGATAGSPGYAAGGAGSWGSAAPSGQPSGAAPGYGYASSDAAYGSRSDSGYMQASSGYGPPAGGASAGSYAGGYGDTHGNAGYGNS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
604	33			66	0.997452
605	33	66			0.997452
607		66	33		0.997452
608		66		33	0.997452
638	16		83		0.994512
640			83	16	0.994512
641		83	16		0.994512
983		90		10	0.90298
1150	88			11	0.999952
1151			88	11	0.999952
1281	25	75			1.0
1285			75	25	1.0
1315	11			88	0.923564
1316	88	11			0.923564
1319			88	11	0.923564
1357			85	14	0.993533
1386	75	25			0.996473
1388	75			25	0.996473
1389			75	25	0.996473
1530		85		14	0.993533
1592	14		85		0.993533
1593		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain