SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11499

Length: 1509 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11499

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15745	107/107

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-gamma n=1 Tax=Prunus avium RepID=EF1G_PRUAV	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	elongation factor 1-gamma-like	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3		IPR012335	-	-
Sma3	Translation elongation factor EF1B, gamma chain, conserved	IPR001662	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWP6

Fln msg:

Fln protein: MALTLHAGSTNKNAFKALISAEYVGIKVSLAPNFEMGRAKTPEFLKMNPIGKVPVLETPEGAVFESNAIARYVARLKGNNSLFGSSVIDYAHVEQWIDFSTLEIDINITRWFYPRLGFGVYLPPAEEATIAGLKRSLAALNSHLATNTYLVGHSITLADIIMTCNLYLGFTSCMTKDFTKEFPHVERYFWTMVNQPKFKKIMGEVKQTDAVPPVVQTRKAAATKEQKQKPKQEAPKKEPANPKVEDTPAYDEEEAPKPKPKNSLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSYVTLNKVTGFLQRMDLARKYAFGKMLIIGEKGPFKVKGLWLFRGPEIPKFVMDECYDMELYEWTKVDINDEAQKERVNAMIEDQEPFEGEPLLDSKCFK*

Protein Length: 422

Fln nts: AAGCAGTGGTATCACGTCAGAGTACGCGGGGATCTCCTGGCTCACCACATTTCTGAGGAAGGAGGCGCTTCTGGCATATAGAGTCTCGGACGATTTTCATCTGTTTGTTGTGGGCTGAATATTAACTATTCATCGGGTTGCATACACTCGGAGTGGCCTACAAGGCTTTACAATCGGTTTCTGAAACT_-_ATGGCACTGACTTTACATGCAGGCTCTACCAATAAAAATGCCTTTAAAGCACTGATTTCGGCAGAGTATGTTGGTATAAAAGTCAGCTTGGCCCCAAATTTTGAAATGGGGAGGGCTAAAACCCCAGAATTTCTTAAAATGAATCCTATAGGCAAGGTTCCAGTTTTGGAGACACCAGAGGGTGCAGTGTTTGAGAGTAATGCGATTGCACGTTATGTTGCACGATTGAAGGGTAACAATTCCCTGTTTGGATCTTCTGTAATTGATTACGCCCATGTTGAACAGTGGATAGATTTTTCTACTTTAGAAATTGATATAAATATCACGCGGTGGTTCTATCCTCGACTTGGATTCGGAGTGTACCTCCCACCGGCAGAGGAGGCCACCATTGCTGGCCTCAAAAGAAGTTTAGCTGCATTGAATTCACACCTGGCTACAAATACCTATCTGGTTGGGCATTCCATAACATTGGCAGACATTATTATGACATGCAACTTGTATTTGGGTTTTACGTCTTGCATGACAAAAGACTTCACTAAAGAGTTTCCTCATGTTGAGCGGTACTTTTGGACTATGGTTAATCAACCTAAATTCAAGAAGATTATGGGTGAAGTTAAACAAACAGATGCTGTTCCTCCAGTTGTGCAGACTAGGAAGGCTGCTGCAACCAAGGAACAAAAGCAAAAGCCTAAACAGGAGGCCCCAAAAAAAGAACCCGCAAACCCCAAGGTTGAAGATACTCCAGCATACGATGAGGAAGAGGCCCCCAAGCCAAAGCCAAAAAATTCTCTTGATCTCCTACCACCAAGTAAAATGATTCTTGATGACTGGAAGAGGCTTTATTCGAACACGAAGACTAATTTTCGAGAGGTTGCTATTAAAGGGTTCTGGGATATGTATGATCCAGAGGGTTATTCCTTGTGGTTCTGTGAGTACAAATACAATGATGAGAACACAGTTTCATATGTCACATTGAACAAAGTCACGGGATTCTTGCAGCGCATGGATCTTGCACGCAAGTATGCTTTTGGAAAGATGCTTATCATTGGAGAAAAGGGTCCTTTTAAAGTCAAGGGATTATGGCTCTTCCGTGGCCCAGAAATTCCGAAGTTCGTTATGGATGAATGCTACGATATGGAGTTGTATGAATGGACTAAGGTGGACATCAATGATGAGGCTCAGAAAGAGCGTGTGAATGCCATGATTGAAGATCAAGAGCCCTTTGAGGGTGAGCCTTTGTTGGATTCCAAATGTTTCAAGTGA___TTCTGAATCCCAGTTTTGAAGATTTTTGGTTGTGTTTAGAAATATCTTGTTTTACATT

Fln Alignment:

Contig11499___MALTLHAGSTNKNAFKALISAEYVGIKVSLAPNFEMGRA-KTPEFLKMNPIGKVPVLETPEGAVFESNAIARYVARLKGNNSLFGSSVIDYAHVEQWIDFSTLEIDINITRWFYPRLGFGVYLPPAEEATIAGLKRSLAALNSHLATNTYLVGHSITLADIIMTCNLYLGFTSCMTKDFTKEFPHVERYFWTMVNQPKFKKIMGEVKQTDAVPPVVQT--RXXXXXXXXXXXXXXXXXXXXXXNPKVEDTPAYDEEE-APKPKPKNSLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSYVTLNKVTGFLQRMDLARKYAFGKMLIIGEKGPFKVKGLWLFRGPEIPKFVMDECYDMELYEWTKVDINDEAQKERVNAMIEDQEPFEGEPLLDSKCFK
A9NWP6__________________MALTLHAGHTNKNAFKALIAAEYVGVKINLAPNFEMGVTNKSQKFLSMNPIGKVPVLETPEGAVFESNAIARYVARLKDDNSLFGSSLIDYGHVEQWIDFSSLEIDINIMRWYFPRMGHGLYLPPAEEATIAGLKRGLAALNSHLATNTYLVGHSITLADIIMTCNLYLGFSRCMTKDFTKEFPHVERYFWTMVNQPKVKKILGEVKQADAVPAVVHPNKKAAAPAKEQKQKPKQEVKIKEAAKPKVEDPPAADEEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVTGFLQRMDLARKYAFGKMLIIGKEGPFKVKGLWLFRGPEIPKFFVDECYDMELYEWTKVDLNDEAQKELVNAMIEDQEPFEGEPLLDAKCFK

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
354	16			83	0.994512
355	16			83	0.994512
420	14		85		0.993533
421			85	14	0.993533
492	15			84	0.999986
493	15			84	0.999986
495	84		15		0.999986
496			84	15	0.999986
646	13	86			0.999973
661	13		86		0.999973
886		10	90		0.90298
888			88	11	0.923564
889			88	11	0.923564
943		14	85		0.993533
945			85	14	0.993533
946			85	14	0.993533
1057		10	90		0.90298
1059			90	10	0.90298
1060		10	90		0.90298
1064	10	90			0.90298
1065			10	90	0.90298
1066	90			10	0.90298
1067			10	90	0.90298
1069	90		10		0.90298
1070	90	10			0.90298
1076	10			90	0.90298
1079			90	10	0.90298
1096	11		88		0.923564
1097	88			11	0.923564
1099			88	11	0.923564
1133	87			12	0.992554
1197		20		80	0.995493
1198	20	80			0.995493
1224		25	75		0.996473
1227	25		50	25	0.995533
1309		25	75		0.996473
1312			75	25	0.996473
1433	25		75		0.996473
1444		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain