SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11498

Length: 1469 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11498 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15480	3/114
SustainPine v2.0	sp_v2.0_unigene21437	1/114
SustainPine v2.0	sp_v2.0_unigene23295	89/114
SustainPine v2.0	sp_v2.0_unigene60346	19/114
SustainPine v2.0	sp_v2.0_unigene78505	1/114

Source	Descriptions	Term	Type	Identity
AutoFact	BURP domain-containing protein (Fragment) n=2 Tax=Bruguiera gymnorhiza RepID=Q94IC5_9ROSI	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	burp domain-containing protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	BURP domain	IPR004873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU27

Fln msg:

Fln protein: MACNMWFSTALVVLLLYVAVGSEEVQAESSASPTLSYWHRKLPTTPIPDALQQLIFPFSSQKTSELLNALLNAIREGNKVSSIETTPEVLVHYRSAADDNAILADPSLSAMFFLEEDFRTGAKLTLYRKNLKRSSPDSRIFFLPRRLAEAIPFSSDKLSVALEMLNITQGSQTALDMKETLQLCESPAISGEIKYCPTSLESMIDYATSTLGTRGVSVLETDVPCNLNSQRYTITGIPFQSKSGIKSAICHSLIYPYAVYYCHQIHQTTAARVSLKGDDGSTGEGAAVCHSDTSAWNPQHVAFKVLNVKPGGAAICHLVSGSNVLWVPVN*

Protein Length: 332

Fln nts: ACGCAAACTGATCAACGTGATTCAGGATAATACTATTTTGAAGGATTTGCTTTCATTTGCTTTC_-_ATGGCATGCAACATGTGGTTTTCTACTGCCCTCGTTGTTCTTCTACTGTATGTCGCAGTGGGCAGTGAAGAAGTGCAGGCTGAGTCTTCTGCATCTCCGACACTGAGTTACTGGCATCGTAAGTTGCCAACGACGCCCATTCCTGATGCTCTGCAGCAACTCATTTTCCCTTTCTCATCCCAGAAAACGTCGGAACTGCTGAACGCACTGCTGAACGCCATAAGAGAGGGCAACAAAGTTTCTAGCATCGAAACCACCCCGGAAGTATTGGTACATTACCGTTCCGCGGCAGACGACAATGCCATCCTAGCCGACCCTTCATTGTCGGCGATGTTTTTCCTGGAGGAGGACTTCCGCACTGGAGCAAAGTTGACTCTCTACAGAAAAAATCTAAAGAGATCAAGCCCGGACAGTAGAATATTCTTCCTTCCACGTCGTTTAGCTGAAGCTATTCCATTCTCGTCTGATAAACTCTCAGTAGCCTTGGAGATGCTCAACATAACCCAAGGATCCCAGACAGCTCTTGATATGAAGGAGACTTTACAACTGTGTGAAAGTCCCGCAATTAGTGGAGAGATCAAATATTGCCCAACATCGTTGGAATCCATGATTGATTATGCCACTTCTACTTTGGGGACCAGGGGCGTGAGTGTGTTAGAGACGGATGTACCCTGCAACCTCAACTCTCAGCGATATACTATCACTGGCATTCCTTTCCAGAGCAAATCCGGCATAAAGTCAGCGATTTGTCACAGCCTGATATATCCATACGCTGTGTACTATTGCCATCAAATTCACCAGACCACCGCTGCGCGGGTGTCTCTCAAGGGCGACGATGGCAGCACTGGAGAGGGAGCGGCGGTGTGTCACAGTGACACGAGTGCGTGGAATCCTCAACACGTGGCATTCAAGGTTCTCAATGTCAAGCCCGGTGGTGCAGCCATCTGCCACTTAGTGTCCGGCTCAAACGTTCTCTGGGTCCCTGTCAACTAG___ATTCTCTATCTACGTATCATCTACAATCTGTATGTAGTGTGTATTGGTCTTCTCCTTCTCTGTATTCGTGTATCTAGTGTGTATTGTTCTTCTCCTTCTCTGTGTTCGTGTATCTAGTGTGTATTGGTCTTCTCCTTCTCTGTATTCGACGAGAAGATCAAGTCTATAGTGCCCCGCTTTTATGGCGCCATAAGATATACATGGACTGCCGTATATAAAATAACGACGGCACCAGATTATAATAAAATCATATCCAAGGAAGCCCCATAGTGGGCGGGCACCTTCCGTCGCCTATTGTAAATTATAACGGGGCCGGCCTATGGACCATAGGCCCCACACTAGTGGCTATGACCGTCTATGTAGTCGTTGTATTTTGTATAATGTTTTTATGACAATAATGAAAATATACATT

Fln Alignment:

Contig11498___GSEEVQAESSASPTLSYWHRKLPTTPIPDALQQLIFPFSSQKTSELLNALLNAIREGNKVSSIET------------------TPEVLVHYRSAADDNAILADPSLSAMFFLEEDFRTGAKLTLYRKNLKRSSPDSRIFFLPRRLAEAIPFSSDKLSVALEMLNITQGSQTALDMKETLQLCESPAISGEIKYCPTSLESMIDYATSTLGTRGVSVLETDVPCNLNSQRYTITGIPFQSKSGIKSAICHSLIYPYAVYYCHQIHQTTAARVSLKGDDGSTGEGAAVCHSDTSAWNPQHVAFKVLNVKPGGAAICHLVSGSNVLWVP
A9NU27__________________GSEAMHAKSSTSPTLSYWHLNLPTTPIPDTLRELISPLSSEKTSELLDA----IREGKKVSMAEPDPTPKLGRKGGPDSVASQVPQGIYIYGSAADDD-IIADPSVSAMFFHEKDLHTGRKLTLYSTLLKRSSPDNRVFFLPRRLAEAIPFSSDKLSVALEKLDISQGSDTALAMKQTLKACEGPANSGERRYCATSLESMIDYTTSTLGTSSLNVLETNVPCKLESQKYTITGIPFQSKSGSKAVVCHSETYAYAVYYCHEAQHITTARVSLKGEDGSSGEGVAVCHTDTSGWNPQHLAFKVLNVKPGGAPVCHFVPNGEVLWLP

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
441	33		66		1.0
444		33		66	1.0
486	25			75	0.996473
644		10		90	0.999898
650			88	11	0.999937
675	16	83			0.999991
700	16	83			0.999991
767	12		87		0.992554
768	12		87		0.992554
770		71	14		0.984337
771		85		14	0.993533
800			88	11	0.923564
889	3	10		86	1.0
890	3	86	10		1.0
892	10		86	3	1.0
904	13			86	1.0
917		88		11	1.0
974		12		87	1.0
1013		11		88	0.999937
1028	7	14	78		0.999974
1031	71	21		7	1.0
1052		15	84		0.999986
1057		84		15	0.999986
1093	12	87			0.992554
1094		12	87		0.992554
1095	12		87		0.992554
1096		87		12	0.992554
1146	20		80		0.995493
1147			80	20	0.995493
1148			80	20	0.995493
1286	80		20		0.999996
1361		16		83	0.999991
1366		16	83		0.999991
1369		83	16		0.999991
1387	83		16		0.999991
1388	16	75		8	0.99999
1405		18		81	0.999994
1410			90	10	0.90298
1411		90		10	0.90298
1420	11		88		0.923564
1424	88			11	0.923564
1432	87	12			0.992554
1434	87			12	0.992554
1441		33		66	1.0
1444		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain