SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11492

Length: 1255 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11492 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17217	118/119
SustainPine v2.0	sp_v2.0_unigene61478	1/119

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: AMME syndrome candidate gene 1 protein homolog [Monodelphis domestica]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ammecr1 protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMMECR1 domain	IPR002733	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ83

Fln msg:

Fln protein: MVSANKEMVVYCFDTLVAHYTGELVPPPAFDEGQHPLFVTWKKVVGGEPRLRGCIGTLEARCLFNGFKDYALTSALRDRRFSPIQAREIPYLECTVSILTDYEPAANHLDWEVGKHGMIMEFNDPDNTRRSATYLPEVAAQEGWTKTETIDSLMRKSGYMGPITESLRKRVRITRYQSTLYTMHYSDYVTFVKRTRGTAPLIGSRPYH*

Protein Length: 210

Fln nts: CATGGGATTTCCTTCAGCTCTACCCATTTTAATCTTTTCCCCACACGCTTCCCTTTTTATAATGGAGGCTTGCATTCATGGGCACGATTGACAGAAGAAGAATATTTGCCCAGAAGCGTTTTGGGAGTGGGGAGACGGGATACTCGGGACTTTTTGATCAATTGTTCTCTCCATTCCTCTTTATAAGAAGAAGAGCTTAAGATCTTCTCATAGTCCAAGGGATTTAGGAAGGAAAACAATCCCTGCATAGCTATGACGATCTGACGATTCCCGCATAGCATTTTTCTGGTATTTGTGCAGAGACCCTTTATCTGTGAAACCCGTGTTCGAATCGCGGGCTAGGTGAATTCGTGACGAGAAATTCATCCAAATCATACA_-_ATGGTGTCTGCAAACAAAGAAATGGTGGTGTACTGCTTTGACACTTTAGTGGCCCATTACACCGGCGAGCTTGTGCCTCCTCCTGCCTTTGACGAGGGTCAGCATCCATTATTTGTCACATGGAAAAAAGTTGTTGGCGGGGAGCCTCGTCTGAGAGGATGTATTGGTACATTGGAAGCCAGGTGTCTTTTTAATGGGTTCAAAGACTACGCTCTGACAAGTGCCCTGCGTGATCGCCGCTTTTCTCCAATACAAGCCAGAGAAATTCCATACCTGGAATGCACAGTATCTATCCTAACAGATTATGAGCCTGCAGCCAATCATCTAGATTGGGAGGTAGGAAAGCATGGCATGATTATGGAGTTTAATGATCCAGATAATACAAGGCGCAGTGCAACTTACTTGCCTGAAGTAGCCGCACAAGAAGGTTGGACAAAGACCGAGACAATTGATTCACTGATGCGCAAATCAGGGTATATGGGTCCTATTACCGAGTCTCTTCGCAAAAGAGTTCGCATCACACGTTACCAGAGCACTCTTTACACCATGCATTACAGCGACTATGTTACATTTGTAAAGAGAACAAGAGGAACTGCTCCTCTTATTGGATCGAGGCCCTATCATTAA___TGCGAGGGCTTCTTTCTGAAATAGATTATTACTTAAACATTAATGCCTTTTGGTTATGAACACAAGGGATCATTAAAATGATCCTCTTTTATTGACAGTGGGTTTGATTATTTTAAACTCCAAACCTTCTGCTAATCTCTTTTCCATTTCTTTGTAACACAAAAGGTATTGCTGACTGATAATACCTTCAGAAACAATTGATTTGTCAAGAATACCAGAATCAATGGGGCAATTGATTTACATTCACATT

Fln Alignment:

Contig11492___MVSANKEMVVYCFDTLVAHYTGELVPPPAFDEGQHPLFVTWKKVVGGEPRLRGCIGTLEARCLFNGFKDYALTSALRDRRFSPIQAREIPYLECTVSILTDYEPAANHLDWEVGKHGMIMEFNDPDNTRRSATYLPEVAAQEGWTKTETIDSLMRKSGYMGPITESLRKRVRITRYQSTLYTMHYSDYVTFVKRTRGTAPLIGSRPYH
A9NZ83__________________MVSANKEMVVYCFDTLVAHYTSELVPPPAFDEGQHPLFVTWKKVVGGEPRLRGCIGTLEARCLFNGFKDYALTSALRDRRFPPIQAREIPYLECTVSILTDYEPAANYLDWEVGKHGMIMEFSDPDNTRRSATYLPEVAAQEGWTKTETIDSLMRKSGYMGPITESLRKRVRITRYQSTLYTMHYSDYVTFVKKTRGAAPLIGTRPYH

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
692			91	8	0.999766
693	87			4	0.999414
779			86	13	0.999973
858	12			87	0.992554
859		12		87	0.992554
860	12	87			0.992554
864	14		85		0.993533
865		14		85	0.993533
949	88	11			0.923564
951			88	11	0.923564
952			88	11	0.923564
985	12		87		0.992554
986			87	12	0.992554
987	12		75	12	0.975346
988	85	14			0.993533
991		85		14	0.993533
1006		16	83		0.994512
1007	16	83			0.994512
1009	83			16	0.994512
1050	11		88		0.923564
1051	88	11			0.923564
1053			88	11	0.923564
1054	88			11	0.923564
1059	62	37			1.0
1062	12	87			0.992554
1063		12		87	0.992554
1064	12	87			0.992554
1065	12			87	0.992554
1066		12		87	0.992554
1067	14	85			0.993533
1078		16	83		0.994512
1080			83	16	0.994512
1081			83	16	0.994512
1093		83		16	0.994512
1094	83		16		0.994512
1115	20			80	0.995493
1118		75	25		0.996473
1119		75		25	0.996473
1199	66	33			0.997452
1200	66	33			0.997452
1201	66	33			0.997452
1202	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain