SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11486

Length: 2078 nt

UniGene Fasta

>biog3_v1.0_unigene11486
AGTGTTGTGTTGTGTTGTGTGCGGCCAGTGGTTCAGGCAGCCATCAGCCAGCCAGCCAGCCATCCAATTTGTGCTCATCTATAGTTACGCTGTGTGAGATCGTATTTCCAACTTTTCTTCGACTTTTATATCACAGATCTGCCGCTATCTATCGGCCAAAGTGTTTAGACCATGGATTACGAGAGCCCGAGATCGATTCTCTCTGTCACGCTTCTGGTTCTGTTCATTGCAGCCTCCGATGCCGCAGCGTTGCAGAAAGTTGGCTTGCTATCGAATTCTTCTAATTCTCAGGTAGCTATTAGCTCCAATTCGGTGCTCGTGGCTCTGCTGGACTCCCATTACACCGAGCTGGCGGAGCTAGTCGAGAAAGCGTTGCTCCTCCAGACCCTGGAAGAGGTCGTTGGTAGCAACAATGTCACGATCTTCGCTCCCCAGAATGATATTCTGGAGCGAAAGCTGGATCCGGAGTTCAAGCGTTTCTTGCACGAACCGGGGAATCTGAAGGCCCTGCAGAAGTTGCTCATGTTCCACGTGGTTCCTCGGAGAATCGTTGCCGAGGAATGGAGCAACGGTACCCATGAGTCTCTGGCCAAAGACCCGCTGAAGCTCTCGATGAAGGGGGGCAAAAGGACCATCGATCTGGCCTCCGTTGCCCACCCCAATGCCGTCGTGAGGCCCGACGGTGTCATCCACGGGATCGACAGAATGCTGATACCCAAGAGCGTCCAGGACGATTTTAACAAATGGAGAAGCGGCGTTACTCTGGCCGTTATGCCAGAGGGGGCTCCGGTTCTGGAAACCAGTAAGAAATTGGCAAAATCATTTCACCCTTCGTCTCTTTCTGCCACGTCTCCGCCCATTCATTCAATCTACTACGCCCTGGCATCGGCTCCGTCCCTGGCACCGGCGCCCGCTCCGGGGCCCTCTTCTGGCCACTACTGGTTCGATGGTGAGAGCCAAGTGAAGGATTTCATCCACACATTGGTGCTCTACGGTGGCTACAATGAAATGGCGGACATTATGGTAAATCTCACATCTCTGGCCTCCGAGCTCGCGAAGCTCGTCTCCGAGGGCTATAAAGTCACGATCCTCGCGCCCAATGATGAGGCCATGGCCAAGCTCACAACAGAGCAGCTCAGTGAGCCCAGAGCCCCGGAAAATATACTGTATTACCACATTATTACCGACTATCAGACCGAGGAGAGCATGTATAATGCCGTGAGGAGGTTCGGGAAGATGAAGTATGATACGCTCAGGATTCCCCACAAGATAACTTCTCAGGAAGCAGATGGGACTGTGGTGTTCGGAGAGGGGGAAGAGGCTGCGCATTTGTTAGATCATGACCTGTATGTTGATGGCAGGATTTCAGTCCAGGGGATTGATAGAGTTCTGTTTCCCCCAAAACCACAGGTCGCCAAGACCGTCAAGACAAAGGGAAGAAAACTTGGAGAAGAAGAGGAAGAGGAGGAAGATGTAGTTAACGAGTCAAAGCCTGCTAGAGGACGTTGGTTGACAGAAGCTGTATGTGGGCTGTTTCCGATTCTAATGCCCAGCTGTCAATAATTGTTTATACATAAAAGTACCTTGAGCAAATTCCTTTCATGGTTGGGATTATTTACGTCTTTGTCCCAAGCACGTAAATAAAAACTATTCTATTCTTTTCTATTATGATGATGATATATGTGTGCCAAACTGAGAGGAGATCTGGAGATGGAGGACGATCTATTGCGGGCCATAGCCATAGACCTTGAATACATCGACGAGGATGTTGCAGCAGCAGAGTAGCATACCATGAACCATATTCATGTGTAATACTTTGTAATAGCGAAATGTACTAGTGCGTTTTATTTTCCATTAAAATTAGTATGAAGGACTGGAGTTGGATCATTATAGCCAGATGATTGTTACATTTAATATTTTGTTTGATTCCTGAAGTGAGAATCGTTACATAAAGCAGGAAAGGTTCTTTCCTGTGGAGTCACTTCTTCCTCTTCGGTCGTGCCCAAAGACAAGTCTTTGGCACTGTAATAAAATGGGAAAAAATCATGTTAATATACAATTAATTCCGATTCTTTTCT

Ace file of the UniGene biog3_v1.0_unigene11486

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18021	132/134

Source	Descriptions	Term	Type	Identity
AutoFact	fasciclin-like arabinogalactan protein 17 [Arabidopsis thaliana] sp\|Q66GR0.1\|FLA17_ARATH RecName: Full=Fasciclin-like arabinogalactan protein 17; Flags: Precursor gb\|AAU05465.1\| At5g06390 [Arabidopsis thaliana] gb\|AAV74247.1\| At5g06390 [Arabidopsis thalia	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	fasciclin-like arabinogalactan protein 17	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	FAS1 domain	IPR000782	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXQ4

Fln msg:

Fln protein: MDYESPRSILSVTLLVLFIAASDAAALQKVGLLSNSSNSQVAISSNSVLVALLDSHYTELAELVEKALLLQTLEEVVGSNNVTIFAPQNDILERKLDPEFKRFLHEPGNLKALQKLLMFHVVPRRIVAEEWSNGTHESLAKDPLKLSMKGGKRTIDLASVAHPNAVVRPDGVIHGIDRMLIPKSVQDDFNKWRSGVTLAVMPEGAPVLETSKKLAKSFHPSSLSATSPPIHSIYYALASAPSLAPAPAPGPSSGHYWFDGESQVKDFIHTLVLYGGYNEMADIMVNLTSLASELAKLVSEGYKVTILAPNDEAMAKLTTEQLSEPRAPENILYYHIITDYQTEESMYNAVRRFGKMKYDTLRIPHKITSQEADGTVVFGEGEEAAHLLDHDLYVDGRISVQGIDRVLFPPKPQVAKTVKTKGRKLGEEEEEEEDVVNESKPARGRWLTEAVCGLFPILMPSCQ*

Protein Length: 465

Fln nts: AGTGTTGTGTTGTGTTGTGTGCGGCCAGTGGTTCAGGCAGCCATCAGCCAGCCAGCCAGCCATCCAATTTGTGCTCATCTATAGTTACGCTGTGTGAGATCGTATTTCCAACTTTTCTTCGACTTTTATATCACAGATCTGCCGCTATCTATCGGCCAAAGTGTTTAGACC_-_ATGGATTACGAGAGCCCGAGATCGATTCTCTCTGTCACGCTTCTGGTTCTGTTCATTGCAGCCTCCGATGCCGCAGCGTTGCAGAAAGTTGGCTTGCTATCGAATTCTTCTAATTCTCAGGTAGCTATTAGCTCCAATTCGGTGCTCGTGGCTCTGCTGGACTCCCATTACACCGAGCTGGCGGAGCTAGTCGAGAAAGCGTTGCTCCTCCAGACCCTGGAAGAGGTCGTTGGTAGCAACAATGTCACGATCTTCGCTCCCCAGAATGATATTCTGGAGCGAAAGCTGGATCCGGAGTTCAAGCGTTTCTTGCACGAACCGGGGAATCTGAAGGCCCTGCAGAAGTTGCTCATGTTCCACGTGGTTCCTCGGAGAATCGTTGCCGAGGAATGGAGCAACGGTACCCATGAGTCTCTGGCCAAAGACCCGCTGAAGCTCTCGATGAAGGGGGGCAAAAGGACCATCGATCTGGCCTCCGTTGCCCACCCCAATGCCGTCGTGAGGCCCGACGGTGTCATCCACGGGATCGACAGAATGCTGATACCCAAGAGCGTCCAGGACGATTTTAACAAATGGAGAAGCGGCGTTACTCTGGCCGTTATGCCAGAGGGGGCTCCGGTTCTGGAAACCAGTAAGAAATTGGCAAAATCATTTCACCCTTCGTCTCTTTCTGCCACGTCTCCGCCCATTCATTCAATCTACTACGCCCTGGCATCGGCTCCGTCCCTGGCACCGGCGCCCGCTCCGGGGCCCTCTTCTGGCCACTACTGGTTCGATGGTGAGAGCCAAGTGAAGGATTTCATCCACACATTGGTGCTCTACGGTGGCTACAATGAAATGGCGGACATTATGGTAAATCTCACATCTCTGGCCTCCGAGCTCGCGAAGCTCGTCTCCGAGGGCTATAAAGTCACGATCCTCGCGCCCAATGATGAGGCCATGGCCAAGCTCACAACAGAGCAGCTCAGTGAGCCCAGAGCCCCGGAAAATATACTGTATTACCACATTATTACCGACTATCAGACCGAGGAGAGCATGTATAATGCCGTGAGGAGGTTCGGGAAGATGAAGTATGATACGCTCAGGATTCCCCACAAGATAACTTCTCAGGAAGCAGATGGGACTGTGGTGTTCGGAGAGGGGGAAGAGGCTGCGCATTTGTTAGATCATGACCTGTATGTTGATGGCAGGATTTCAGTCCAGGGGATTGATAGAGTTCTGTTTCCCCCAAAACCACAGGTCGCCAAGACCGTCAAGACAAAGGGAAGAAAACTTGGAGAAGAAGAGGAAGAGGAGGAAGATGTAGTTAACGAGTCAAAGCCTGCTAGAGGACGTTGGTTGACAGAAGCTGTATGTGGGCTGTTTCCGATTCTAATGCCCAGCTGTCAATAA___TTGTTTATACATAAAAGTACCTTGAGCAAATTCCTTTCATGGTTGGGATTATTTACGTCTTTGTCCCAAGCACGTAAATAAAAACTATTCTATTCTTTTCTATTATGATGATGATATATGTGTGCCAAACTGAGAGGAGATCTGGAGATGGAGGACGATCTATTGCGGGCCATAGCCATAGACCTTGAATACATCGACGAGGATGTTGCAGCAGCAGAGTAGCATACCATGAACCATATTCATGTGTAATACTTTGTAATAGCGAAATGTACTAGTGCGTTTTATTTTCCATTAAAATTAGTATGAAGGACTGGAGTTGGATCATTATAGCCAGATGATTGTTACATTTAATATTTTGTTTGATTCCTGAAGTGAGAATCGTTACATAAAGCAGGAAAGGTTCTTTCCTGTGGAGTCACTTCTTCCTCTTCGGTCGTGCCCAAAGACAAGTCTTTGGCACTGTAATAAAATGGGAAAAAATCATGTTAATATACAATTAATTCCGATTCTTTTCT

Fln Alignment:

Contig11486___MDYESPRSILSVTLLVLFIAASDAAALQKVGLLXXXXXXXXXXXXXXVLVALLDSHYTXXXXXXXXXXXXQTLEEVVGSNNVTIFAPQNDILERKLDPEFKRFLHEPGNLKALQKLLMFHVVPRRIVAEEWSNGTHESLAKDPLKLSMKGGKRTIDLASVAHPNAVVRPDGVIHGIDRMLIPKSVQDDFNKWRSGVTLAVMPEGAPVLETSKKLAKSFHPSSLSATSPPIHSIYYXXXXXXXXXXXXXXXXXXXHYWFDGESQVKDFIHTLVLYGGYNEMADIMVNLTSLASELAKLVSEGYKVTILAPNDEAMAKLTTEQLSEPRAPENILYYHIITDYQTEESMYNAVRRFGKMKYDTLRIPHKITSQEADGTVVFGEGEEAAHLLDHDLYVDGRISVQGIDRVLFPPKP---QVAKTVKTKGRKLGXXXXXXXDVVNESKPARGRWLTEAVCGLFPILMPSCQ
A9NXQ4__________________MDYQSPRSIIVAILLALFIAASNAAALQKAGLPSNSSSSQVAINSNSVLVALLDSHYTELAELVEKALLLQTLEEVVGSSNVTIFAPQNDILERKLDPEFKRFLHEPGNLKALQKLLMFHVVPRRIVAEDWRNGTHQTLAKDRLKLSMKGDKKTIDLASVAHPNAVVRPDGVIHGIDRMLIPKSVQDDFSKWRSGVSLAVMPQGAPVLDPIKKLSKSVAASSLSAKSPPIHSIYYALAPGPSLAPAPAPGPSTGHYWFDGESQVKDFINTLVLYGGYNEMADILVNLTSLASELAKLVSEGYKVTVLAPNDEAMGELTTEQLSEPGAQEHIMYYHIIPEYQTEESMYNAVRRFGKMKYDTLRIPHKITSQEADGTVLFGEGEQSAHLFDHDIYVDGRISVQGIDKVLFPPQPKDVKTVKTVKTKGRKL--REEEEEEAVNESQPTRGRLLTRAVCGLFPILMPSCQ

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
544	11		88		0.923564
578	12	87			0.992554
582	87			12	0.992554
634	12	87			0.992554
637		87	12		0.992554
638			87	12	0.992554
640		12		87	0.992554
641	12	87			0.992554
643			87	12	0.992554
688	12	87			0.992554
691		87		12	0.992554
694		87		12	0.992554
695			87	12	0.992554
753			85	14	0.993533
757		85		14	0.993533
827	14			85	0.993533
830		85		14	0.993533
831		85		14	0.993533
835	14	85			0.993533
836	14		85		0.993533
838		85	14		0.993533
1205	16		83		0.999991
1206	83			16	0.999991
1208		83		16	0.999991
1302	15		84		0.999986
1303		15		84	0.999986
1304	15		84		0.999986
1437	12		87		0.992554
1438		12	87		0.992554
1440	87			12	0.992554
1441			87	12	0.992554
1642	87	12			0.992554
1645	85			14	0.993533
1658		16		83	0.994512
1659	14			85	0.993533
1660		85		14	0.993533
1704		12	87		0.992554
1706		12		62	1.0
1707	37	62			1.0
1709			71	28	1.0
1740	14		85		0.993533
1741		85		14	0.993533
1742		85	14		0.993533
1764	14		85		0.993533
1765	85			14	0.993533
1766			85	14	0.993533
1826	80			20	0.995493
1919		12		87	0.992554
1920	12			87	0.992554
1976	12			87	0.992554
1977		12	87		0.992554
1980			87	12	0.992554
2022	16		83		0.994512
2025		83		16	0.994512
2037	25		75		0.996473
2038		25	75		0.996473
2039	25		75		0.996473
2040	66			33	0.997452
2041	33			33	0.997753

SSRs (tot: 2)

Start position	End position	Sequence	Length
2	20	GTGTT GTGTT GTGTT GTGT	19
45	62	CAGC CAGC CAGC CAGC CA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain