SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11476

Length: 1561 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11476

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9368	140/141

Source	Descriptions	Term	Type	Identity
AutoFact	UVB-resistance protein UVR8 [Arabidopsis thaliana]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	rcc1 and btb domain-containing protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	81%
Blast2go	guanyl-nucleotide exchange factor activity	GO:0005085	Molecular Function	81%
Blast2go	chromatin binding	GO:0003682	Molecular Function	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: atg_distance in limit (1-15): atg_distance = 10, your sequence is longer than subject: 391 - 286

Fln protein: MSTYCTIVSALDGCEITSVICGADHTTAYSDSTLVVYSWGWGDFGRLGHGDSSDLFIPQAIKTLQGLRIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGLGNTEDSLVPQKIQGFQGIAVKMVAAGAEHTVAVTEDGKVYGWGWGRYGNLGLNDRNDRLVPEEVAAINGEKFTMVACGWRHTIAISDSGSLYTYGWSKYGQLGHGDNEDHLVPCRVEGLRNVRITQISGGWRHTMALDVDGQLYGWGWNKFGQLGVGDNIDHSGPQRVKLPSEEEVVHVSCGWRHTVVITSKSNVFSWGRGTSGQLGHGDILDRNMPLLIEALSVDGSACEQIQTSKTTVLSGSSWISPSERYAIVPDETGTVQLSTVPKSSIGDASVPDGDIKRVRTE*

Protein Length: 392

Fln nts: A_-_ATGTCGACCTATTGTACAATTGTAAGTGCTCTTGATGGTTGTGAAATTACCTCAGTCATTTGCGGAGCTGATCATACGACAGCATATTCAGACTCGACACTGGTTGTTTACAGTTGGGGCTGGGGAGATTTTGGAAGGCTTGGACATGGAGACTCTAGTGATTTGTTTATTCCACAAGCAATCAAGACCCTACAAGGACTTCGGATCAAGCAAATAGCATGTGGGGATAGTCATTGTCTAGCTGTCACAATAAATGGGGAAGTGCAAAGTTGGGGACGCAACCAAAATGGGCAGCTTGGCCTTGGAAACACGGAAGACTCCCTTGTGCCTCAGAAGATTCAAGGTTTCCAGGGAATAGCTGTAAAGATGGTAGCAGCAGGTGCTGAACATACAGTTGCTGTAACAGAGGATGGAAAGGTTTATGGGTGGGGGTGGGGTCGCTACGGAAACCTAGGTCTGAATGATAGAAACGACCGGCTTGTTCCAGAGGAAGTGGCAGCTATAAATGGAGAAAAGTTTACCATGGTTGCTTGTGGATGGCGCCACACTATTGCAATCTCTGATTCTGGCAGTTTGTACACGTATGGTTGGAGTAAGTATGGACAACTGGGTCATGGCGATAATGAAGATCATCTTGTTCCATGTCGTGTCGAGGGCTTAAGGAATGTTCGCATAACTCAGATCTCTGGTGGCTGGCGACATACAATGGCTCTCGATGTAGATGGGCAACTGTATGGTTGGGGATGGAATAAGTTTGGCCAGCTTGGTGTTGGAGATAATATTGACCACTCTGGCCCACAGAGAGTGAAGCTTCCTTCTGAAGAGGAGGTTGTGCATGTTTCTTGTGGATGGAGACATACAGTTGTAATTACATCCAAAAGTAATGTATTCTCGTGGGGCAGGGGCACAAGTGGCCAGTTAGGACATGGAGACATCCTTGACAGAAATATGCCTCTACTCATAGAAGCCTTGAGTGTGGATGGCTCAGCGTGTGAGCAAATTCAAACTTCTAAAACAACAGTTCTATCAGGCTCAAGTTGGATATCACCATCAGAGAGATACGCAATTGTCCCAGATGAAACTGGTACCGTTCAACTTTCTACTGTCCCCAAGAGCTCTATTGGTGATGCTAGTGTTCCAGATGGTGACATTAAGCGTGTACGAACAGAATAG___TAAAGTAATAAGCAGTGCTGCTTATTTACTATGGAAGATGTGATTTATATTAGGCTATTTCTGGAAGTGTCTGTAATTATAAAATAAGAGATGTATAAGACTTGTCTAGTTATGCACTTGGAATTAATCGAATATGACAATATGACAGCTATAGAGCGAATATTTATTCCGCGGTGGAAAAAGCTTTCAGATGCAAGTGATTGCAGATGCTTTAAACTGGTGTGCATTCATTTGGAGCTCAAGAAACAATCCTTGTGACTATGAAACACCGCATGATACTGAAAATGACGCAATAATTATATTGTAGAGACATAAATTAGTGATGTTAAATTGTTGGCCGTGTATTGAATAACTGTGTTAGTGTTATATATCAGCTATTGCTACATT

Fln Alignment:

Contig11476___TIVSALDGCEITSVICGADHTTAYSDSTLVVYSWGWGDFGRLGHGDSSDLFIPQAIKTLQGLRIKQIACGDSHCLAVTINGEVQSWGRXXXXXXXXXXTEDSLVPQKIQGFQGIAVKMVAAGAEHTVAVTEDGKVYGWGWGRYGNLGLNDRNDRLVPEEVAAIN
B8LNM4__________________TFVSALDGCEITSVICGADHTTAYSDSRLVVYSWGWGDFGRLGHGNSSDLFIPHAIKTLQGLQIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRVKLPAEEEVVQVSCGWRHTVAITGKSNVFSWGRGTSGQLGHGDILDRNMPVLIEALS

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
538	12		87		0.999964
542			87	12	0.999964
758	10			90	0.90298
759		10	90		0.90298
760	10		90		0.90298
762		90		10	0.90298
791		90		10	0.90298
813	10	90			0.90298
814	10			90	0.90298
816		90	10		0.90298
817		90		10	0.90298
862	10	90			0.90298
863	90			10	0.90298
877		90		10	0.90298
894	12			87	0.992554
896	12		87		0.992554
898			85	14	0.993533
938	10	90			0.90298
939	10	90			0.90298
1007	89	10			0.999919
1178	87	12			0.999964
1180			87	12	0.999964
1245	11			88	0.923564
1247	11			88	0.923564
1248			88	11	0.923564
1324	10	90			0.90298
1325		10		90	0.90298
1328	90			10	0.90298
1331	18		72		0.999994
1332		81		18	0.999994
1334	81			18	0.999994
1349	10		90		0.90298
1350	10			90	0.90298
1351			90	10	0.90298
1353	70			10	0.999998
1365		10	90		0.90298
1368			90	10	0.90298
1393	11			88	0.923564
1394		11	88		0.923564
1395	11		88		0.923564
1463	87			12	0.992554
1477	12			87	0.992554
1478		12		87	0.992554
1479	12		87		0.992554
1481	87			12	0.992554
1488		14		71	0.984337
1490	83	16			0.994512
1500	20		80		0.995493
1501	20			80	0.995493
1502		25		75	0.996473
1503	75		25		0.996473
1508		33		66	0.997452
1509	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain