SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11475

Length: 1584 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11475

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16527	146/147

Source	Descriptions	Term	Type	Identity
AutoFact	oligouridylate binding protein-like protein [Solanum tuberosum]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	rna-binding protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR6

Fln msg:

Fln protein: MYAVSQPQLQQIAQQQAGAVQSDQQLQQRLKQQQQLMQQAMLQQQQSLYHAGLLAPLSQIEPIPSGNLPPGFDSSACRSVYVGNISIHVTESLLAEVFAGIGPLEGCKLIKKEKSSYGFVDYYDHRSAANSILTLNGRQIFGQPIKVNWAYASGQREDTTGHYSIFVGDLSPEVTDAALFAAFSIYPTCSDARVMWDQKSGRSRGFGFVSFRNQQDADNAINQMTGKTLGSRTIRCNWATKSSSGNPSDDKQNSEMQFASNASNNTSANGSADLNISAGTTVGVTGGQPKGGAQTSGPENNPLYTTVYIGNLPHEVTQTELHRQFLSLNVGVIEDVRVQRDKGFGFVRYRSHEEAALAIQLANGRVIGGKSIKCSWGSKPTPPGASSNALPPPSAPFPGALVPAQGLNQGYSAADILAYRQLNMSQAGGGQPLLPLSAQQGLGLGLGHGPMGVVGPAGNQNVYDNFQAGAGLPAAAAAAAAMRQQMMYYQ*

Protein Length: 492

Fln nts: AATGTGTGTCATTATAGCTCGATTTGGCTAATGTATTCAGCGGTTGCAAGACCATAAAA_-_ATGTACGCAGTATCGCAACCACAGTTGCAGCAGATTGCCCAGCAGCAAGCCGGCGCTGTTCAGTCGGACCAACAATTGCAGCAGAGGTTGAAGCAGCAGCAGCAACTAATGCAGCAGGCAATGCTTCAACAACAACAGTCTCTCTATCATGCCGGCCTGTTGGCGCCGTTGTCCCAGATTGAGCCAATTCCAAGTGGAAATCTGCCACCCGGGTTTGATTCAAGTGCATGCCGCAGTGTATATGTGGGTAACATAAGTATACATGTCACAGAAAGCCTTCTTGCAGAGGTGTTTGCTGGTATTGGCCCACTGGAGGGATGCAAGCTTATCAAGAAAGAAAAGTCTTCCTATGGGTTTGTGGACTACTATGACCATAGATCAGCAGCAAACTCCATTTTAACTCTTAATGGAAGACAAATATTTGGTCAGCCCATTAAAGTCAACTGGGCTTATGCAAGCGGGCAAAGGGAAGACACAACAGGTCATTACAGTATTTTTGTTGGCGATCTCAGCCCAGAGGTTACAGATGCAGCTCTCTTTGCTGCCTTTTCTATATATCCAACTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGTCTGGCAGATCAAGGGGATTTGGTTTTGTTTCCTTTAGGAATCAGCAGGATGCTGATAATGCTATAAACCAGATGACAGGAAAAACACTTGGAAGTAGAACTATTCGGTGTAATTGGGCAACCAAATCAAGCTCTGGAAATCCAAGTGATGACAAACAGAACTCTGAAATGCAATTTGCTTCAAATGCATCAAATAATACTTCAGCCAATGGTAGTGCAGATCTCAATATTTCAGCTGGAACTACAGTGGGCGTAACAGGAGGCCAGCCAAAAGGTGGTGCCCAAACCTCAGGACCAGAAAACAATCCTTTGTACACAACTGTTTATATTGGAAACTTGCCGCATGAGGTTACCCAGACTGAATTACACAGGCAGTTTCTTTCTTTGAATGTGGGTGTTATTGAGGATGTCCGTGTTCAAAGGGACAAGGGCTTTGGATTTGTCCGTTATCGAAGCCATGAAGAAGCTGCTCTAGCCATTCAGCTGGCTAATGGCAGAGTTATTGGTGGAAAGTCTATCAAATGTTCTTGGGGTAGCAAACCCACTCCTCCAGGAGCTAGCTCTAATGCTCTCCCTCCACCATCAGCACCTTTTCCAGGGGCCCTTGTTCCCGCTCAAGGGTTGAACCAAGGTTACTCGGCTGCTGATATTCTTGCATATCGGCAGTTGAACATGAGCCAGGCAGGAGGAGGTCAGCCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGGCTGGGCCTTGGACATGGTCCCATGGGAGTGGTTGGTCCTGCAGGCAATCAAAATGTATATGATAATTTTCAGGCTGGTGCTGGACTCCCAGCAGCAGCAGCTGCGGCTGCTGCTATGCGGCAACAAATGATGTATTATCAGTAA___TGTGTGACTAGATGGTCTACACACGTTTTTTAGTTTTTGCATAGCTATTTTG

Fln Alignment:

Contig11475___YHAGLLAPLSQIEPIPSGNLPPGFDSSACRSVYVGNISIHVTESLLAEVFAGIGPLEGCKLIKKEKSSYGFVDYYDHRSAANSILTLNGRQIFGQPIKVNWAYASGQREDTTGHYSIFVGDLSPEVTDAALFAAFSIYPTCSDARVMWDQKSGRSRGFGFVSFRNQQDADNAINQMTGKTLGSRTIRCNWATKSSSGNPSDDKQNSEMQFXXXXXXXXXXXXXXDLNISAGTTVGVTGGQPKGGAQTSGPENNPLYTTVYIGNLPHEVTQTELHRQFLSLNVGVIEDVRVQRDKGFGFVRYRSHEEAALAIQLANGRVIGGKSIKCSWGSKPTXXXXXXXXXXXXXXXXXXXXXXAQGLNQGYSAADILAYRQLNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGNQNVYDNFQ--XXXXXXXXXXXXXXMRQQMMYYQ
B8LQR6__________________YHAGLLAPLSQIEPIPSGNLPPGFDSSACRSVYVGNISVHVTEGLLAEVFGAVGPLEGCKLIKKEKSSYGFVDYYDHRSAANSILHLNGKQIYGQAIKVNWAYASGQREDTTGHYSIFVGDLSPEVTDAALFACFSIYPSCSDARVMWDQKSGRSRGFGFVSFRNQQDADNAINQMTGKTLGSRPIRCNWATKSSSGNQSDDKQTSEMQFASNASNNTSANGSADHNISAGTTAVGTGGQQKGGAQTSGPENNPSYTTVYIGNLPHEVTQTELHRQFLALGVGVIEDVRVQRDKGFGFVRYRSHEEAALAIQLANGRVICGKSIKCSWGSKPT-PPGASSNALPPPSAPFQGVVAPQGLNQGYTAADILAYRQLNM--SQAGAGQPLLPLSAQQGMGLGLGHGPMGVVGPNQNVYDNFQAGAGLPAAAAAAAAAAMRQQIMYYQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
875	20	80			0.995493
1113		91		8	0.999766
1252	22	77			0.999999
1255			77	22	0.999999
1256			77	22	0.999999
1269		12		87	0.992554
1547			90	10	0.90298
1549	11			88	0.923564
1558	33		66		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
151	163	AGC AGC AGC AGC A	13
1477	1489	CAG CAG CAG CAG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain