SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11472

Length: 1483 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11472 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16257	146/150
SustainPine v2.0	sp_v2.0_unigene61807	1/150
SustainPine v2.0	sp_v2.0_unigene79545	1/150

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=10 Tax=Pinaceae RepID=A9NVT9_PICSI	-	-	92%
FL-Next	sp=Malate dehydrogenase, cytoplasmic; Zea mays (Maize).	-	-	88%
Blast2go	malate dehydrogenase	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	95%
Blast2go	response to zinc ion	GO:0010043	Biological Process	95%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	95%
Blast2go	oxidoreductase activity, acting on CH-OH group of donors	GO:0016614	Molecular Function	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	95%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	95%
Blast2go	nucleus	GO:0005634	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%
Blast2go	apoplast	GO:0048046	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, NAD-dependent, cytosolic	IPR011274	-	-
Sma3	Malate dehydrogenase, type 2	IPR010945	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q08062

Fln msg:

Fln protein: MAKEPARILVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGIVATTDPVEACSGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLHVPVSNVKNVIIWGNHSSSQYPDVYHASVVTGAGEKPVRELVADDAWLDGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTFVSMGVYSDGSYDVPPGIIFSYPVTCENGSWSIVQGLPINEFSRKKLDATANELVEEKALAYSCLN*

Protein Length: 334

Fln nts: CACCCACTCCGGGCTGACACACATGATGTCAAACCCCTACCAGAATTTTGCCTTTTTACCGGAGGAATCCATTCTACGCTATCTTAATACCTATAAATACGTATTGGTGGGTAGCTAGGCAGATCACTCGTTCAACCAATTTCATTTCATTTGCTTGCTTTGGGCCAGTTTAGCAGACAACACTTCGAA_-_ATGGCGAAGGAACCTGCTCGTATTCTTGTCACTGGAGCTGCAGGACAAATCGGTTATGCATTGGTGCCTATGATTGCTAGAGGCATAATGCTTGGCCCGGACCAACCTGTTATCTTGCACATGCTTGATATTCCTCCAGCAGCAGAGGCTCTGAATGGGGTGAAAATGGAGTTGATAGATGCTGCTTTCCCTCTTTTGAAAGGTATTGTTGCCACCACGGATCCTGTTGAAGCATGTAGTGGTGTAAACATAGCTGTCATGGTTGGTGGATTCCCCAGGAAGGAAGGTATGGAAAGGAAGGATGTTATGTCTAAAAATGTATCTATCTACAAGTCACAGGCCTCAGCATTGGAGCAACATGCTGCTCCAAATTGCAAGGTCTTGGTGGTTGCTAACCCAGCAAATACTAATGCACTGATTTTGAAAGAGTTTGCCCCATCTATTCCGGAGAAGAATGTAACATGCTTGACAAGACTCGATCACAATAGGGCTCTTGGACAGATTTCAGAGAGGCTACACGTTCCAGTCAGTAATGTAAAGAATGTTATAATTTGGGGAAATCACTCTTCAAGCCAGTATCCAGACGTTTACCATGCCTCAGTTGTAACTGGAGCAGGAGAGAAACCAGTGCGAGAGCTTGTTGCAGATGATGCTTGGTTGGATGGGGAATTTATCACCACTGTACAGCAACGTGGTGCAGCAATTATCAAGGCACGGAAGCTGTCTAGTGCACTATCTGCTGCTAGTTCCGCATGCGATCATATCCGTGATTGGGTGCTTGGTACACCTAAGGGTACATTTGTTTCAATGGGTGTATATTCCGATGGATCTTATGATGTTCCACCTGGCATTATCTTCTCATATCCTGTTACTTGTGAAAATGGGAGTTGGTCCATTGTACAAGGACTTCCCATCAACGAGTTCTCAAGGAAAAAGCTGGATGCCACTGCAAATGAACTTGTTGAGGAAAAGGCTTTGGCTTATTCTTGCCTAAATTGA___TTTATCCTTTTCAGATGCATATGTTCAAGCAACTGATTTGAATAAGTGCTATTAGTGAGATAATTGCCAAATTTGGCTTTAGGTATTGGCATGGCTGATATGAGAGATTGCTACTATCCAGATTTTAGTTTGGCTGGAAAGATTTGCTGTAACAACATCACTTCAGTGGACTGTTTTTCCACTATATAAGCACGTGTATGCAAAATTAAATCTGTTGTTTTCAGTTTCTTAGCATTTAGCTGCCTGCCATTTCTTTAGTCTAGGAACTTTGAAGTTAATAAAATAAATACACATT

Fln Alignment:

Contig11472___MAKEPARILVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGIVATTDPVEACSGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLHVPVSNVKNVIIWGNHSSSQYPDVYHASVVTGAGEKPVRELVADDAWLDGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPKGTFVSMGVYSDGSYDVPPGIIFSYPVTCENGSWSIVQGLPINEFSRKKLDATANELVEEKALAYSCL
Q08062__________________MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEKTLAYSCL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
581	12			87	0.992554
582	12	87			0.992554
583		87		12	0.992554
845	13			86	1.0
976		16	83		0.999991
979	83			16	0.999991
1025	15		84		0.999986
1026		15	84		0.999986
1028	84			15	0.999986
1225	83			16	0.999991
1279	11	88			0.923564
1280		11	88		0.923564
1282			88	11	0.923564
1283		88		11	0.923564
1342	87	12			0.992554
1345			87	12	0.992554
1351		14	85		0.993533
1352	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain