SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11466

Length: 1570 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11466

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15525	159/160
SustainPine v2.0	sp_v2.0_unigene78533	1/160

Source	Descriptions	Term	Type	Identity
AutoFact	hydroxypyruvate reductase [Bruguiera gymnorhiza]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	hydroxypyruvate reductase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	92%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	92%
Blast2go	peroxisome	GO:0005777	Cellular Component	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%
Blast2go	apoplast	GO:0048046	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT9

Fln msg:

Fln protein: MRSSVALSQKIGQVVASMAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICSEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAVALTVAAARRVVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYLTAYGEFLMSQGEAPVTWKRASTAEDVLRDADVISLHPVLDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVDHLKANPMFRVGLDVFENEPYMKPGLAEQKNAVVVPHIASASKWTREGMATLAALNVLGKVKGYPVWPDANRLEPFLDENSTPPAACPSIVNAKVLGLDISKL*

Protein Length: 405

Fln nts: ATGGATATGGCTATTGTGTGGCAGGGAAATGGCTCCAAAAATGAGAGGCCCAAGGTCTCAATCTGTTTATCCGCTAACCTGTAGGGTAGGTAGTATAGA_-_ATGAGGAGCAGTGTAGCACTCTCACAGAAAATTGGGCAAGTGGTGGCGTCCATGGCGAAGCCGATTTCGATCGAGGTATGGAATCCTGCAGGGAAACACAGGGTGGTCAGCACCAAATCCATGCCTGGCACCCGTTGGATTCGCCTTCTCACCGATGCAGACTGTCGTCTTGAGATTTGCTCGGAGAAGAAAACTATTTTAGACGTGGAGGACATACAGGCGCTTATTGGTGACAAATGTGACGGAGTAATTGGACAGTTGACAGAGGATTGGGGCGAAACTCTTTTCAGCACCCTCAAACGAGCTGGAGGAACTGCATTTAGTAATATGGCTGTCGGTTACAACAATGTGGATGTGAATGCTGCAAACAAATATGGCATAGCAGTTGGCAACACTCCGGGTGTTCTTACGGAAACAACTGCTGAGTTGGCAGTTGCGTTAACAGTAGCAGCTGCTAGAAGAGTAGTTGAAGCAGATCAGTTTATGAGAGCAGGTCTATATGATGGTTGGCTACCTCACTTATTTGTTGGAAACTTGCTCAAGGGACAAACCGTTGGCATAATTGGCGCTGGAAGGATTGGCTCTGCGTATGCCCGAATGATGGTGGAAGGTTTTAAAATGAATCTCATATACTATGATTTATACCAATCTACTCGACTTGAAAAATATCTGACAGCTTATGGGGAGTTTTTGATGTCTCAAGGTGAAGCGCCAGTTACATGGAAAAGGGCCTCCACTGCTGAGGATGTTCTCAGAGACGCTGACGTGATAAGCCTTCATCCCGTACTAGACAAGACTACTTACCACTTGATTAACAAAGACAGGCTATCGATCATGAAGAAGGAAGCAGTTCTTGTAAATGCAAGCCGAGGCCCAGTGATTGATGAAGCAGCCTTAGTGGACCATTTGAAAGCAAATCCCATGTTTCGTGTAGGATTGGATGTGTTTGAGAATGAGCCATACATGAAGCCTGGTCTTGCAGAGCAGAAGAATGCTGTTGTGGTGCCACACATTGCCTCAGCTTCAAAGTGGACTCGAGAAGGGATGGCCACACTTGCTGCATTAAATGTACTCGGAAAGGTCAAGGGATACCCTGTGTGGCCAGATGCAAACAGATTGGAACCCTTTCTAGATGAGAACTCTACACCTCCAGCTGCCTGTCCAAGCATTGTCAATGCAAAAGTACTAGGTTTAGATATTTCCAAGCTTTAA___GATGGATCCTACGTCTTGGTAAAGATGGTGCGTTTGAACTTGAAGTGCAAGATGACCTGTGTAAAGAAGCTTAACATGGAGTCCGATTGAAAAGGCTCCCAAATGTTGTTAAGAGGCAGGGCCCTTGTACCGTAAAGATACATCTCAAAATATTAATATAAAATTTAGTCGTTTATGCGATTTATGTAATAATTATATCTTTCTGGTGTTTCTTACTGATTTTCCATGGAAAAATGTGAGCCCATATTTTTTACTTACG

Fln Alignment:

Contig11466___MAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICSEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDVNAANKYGIAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDQFMRAGLYDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYLTAYGEFLMSQGEAPVTWKRASTAEDVLRDADVISLHPVLDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVDHLKANPMFRVGLDVFENEPYMKPGLAEQKNAVVVPHIASASKWTREGMATLAALNVLGKVKGYPVWPDANRLEPFLDENSTPPAACPSIVNAKVLGLDISKL
A9NKT9__________________MAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICTEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDLNAANTYGIAVGNTPGVLTETTAELAVALTVSASRRVVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYMTAYGEFLKSQGEAPVTWKRASTAEDVLRDADVISLHPILDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVNHLKANPMFRVGLDVFEDEPYMKPGLAEQKNAVVVPHIASASKWTREGMATLAALNVLGKVKGYPVWPDANKLEPFLDENSAPPAACPSIVNAKLLGLEVSKL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1418	12			87	0.999964
1419		12	87		0.999964
1455	15			23	1.0
1458		90		10	0.90298
1466	11			88	0.923564
1467	88	11			0.923564
1470	88			11	0.923564
1490	12	87			0.992554
1491		12	87		0.992554
1499	14			85	0.993533
1500	85	14			0.993533
1503	85			14	0.993533
1506	16			83	0.994512
1520	25		75		0.996473
1521		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain