SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11461

Length: 2238 nt

UniGene Fasta

>biog3_v1.0_unigene11461
AGTGACACAACCCATTTCTTTATCGCAGATGTATTAGTTGCTATTTCAGTTGTATGTGGCATGATTCTTGCCCTGCGGCTAACTGGATCCTCGGCGCTTCGTTTATGCTCATCTCTATCTCGGTGTTATTAGCACAAAATCTAGCAAGATAGTTAGGTTTGAAGAAAGAAATGGCTGATGAAGCAAAATCAAAAGGAAATGCTGCGTTTTCTTCAGGAAACTACGAGGAAGCTATAAAACATTTCTCTGAAGCTATAGCTCTTGCTCCGACCAATCATGTTTTATATTCAAATCGTTCTGCAGCATATGCTTCATTAAATAAGTATAATGAAGCTCTTCAGGATGCTAAGAAGACAGTGGAAATTAAGGCAGATTGGTCCAAGGGCTACAGCAGGCTTGGGGCAGCATATGTTGGGCTTGGAAAATATGATGATGCAATTTCTTCTTACAAAAAGGGCCTGGAGTTTGATCCTTCAAATGAAGCATTAAAATCAGGCCTTGCTGATGCACAGGCAGCAAGTAGATCTCGTGCTGCATCCTCTCCATTTGGAAATATATTCCAGGGGCCAGAAGTGTGGGCAAAATTAACGGCTGACCCAAAAACAAGATTATATTTGCAGCAACCTGATTTTGTTAAGATGATTCAAGATGTTCAGAAAAATCCTAACAACATTAATATGTATCTTAATGATCAACGCATGATGCAGGTTTTGGGTGTGTTACTAAATGTTAACTTACGTAATGCCACATCAGAGGAGGATGCTTTTGAGCATACTAGTTCACCCAAGCCACAGCCAAAACGAGAACCAGAACCTCAGCCAGAGTCAGAGCCAGAACCAATGGATATTCCAGATGAGGAGAAAGAGAAGAAGGCTCGGAAAACAGAGGCACAGAAGGAAAAGGAACTTGGAAATGCAGCTTATAAGAAAAAAGATTTTGAGGTTGCTATTCAGCATTATTCGAAAGCAATGGATCTGGATGATGAAGATATCTCCTTCCTAACAAACAGAGCAGCTGTCTATTTGGAAATGGGGAAGTATGAAGATTGCATTAAAGACTGTGACAAGGCTGTTGAAAGAGGGAGGGAGCTTCATTCAGATTATAAAATGGTTGCACGGGCTTTGACTAGAAAAGGAACTGCATTTGTTAAGATGGCTAAATGTTCAAAGGACTATGAGCCAGCAATTGAAACTTTCCAGAAAGCACTTACAGAACATCGTAATCCAGATACATTGAAGAAACTTAATGAAGCTGAGAAAGCAAAGAAAGATTTGGAACAACAGGAAGATTTTGATCCAAAGTTGGCGGATGAAGAGCGGGAGAAAGGAAACGAATTCTTTAAGCAGCAGCAGTATCCAGAGGCTATAAAGCATTACACTGAAGCTCTTAGAAGAAATCCCAATGATGCAAGGGTATACAGTAACAGAGCAGCTTGCTATACGAAGCTTGCAGCTTTGCCAGAAGGTCTCAAGGATGCAAATAAGTGTATTGAGTTGGATCCATCATTTACAAAAGGCTATTCAAGGAAAGCTGCTATTCAGTTCTTCATGAAAGAATATGACAAAGCCTTGGAAACCTATCAGGAAGGTCTCAAACTTGATGAAAACAACCAGGAACTGTTAGAAGGTGTCCGGAGATGTATTGAGCAAATCAACAAAACCAACAGGGGTGATATAAGCCCCGAGGAAATGAAGGAGAGACAGGCAAAAGCAATGCAAGATCCAGATATTCAGCATATTCTTTCGGATCCTGTTATGAGACAGATTCTAATGGATTTCCAAGAGAACCCAAAGGCAGCACAGGATCATCTGAAGAATCCTGAAGTAATGCATAAGATTCAGAAGCTTGTGAGTGCGGGTATTGTACAAGTGAGATGAAGAGGGCCATTGTTTTGTTCAGAAAGCTCTTTCTATGAATTTGTAGAGAACACTTACCTTTTGTTTGTATCTGAAAGAGCCTTGAATAAAATGCATGCCAAAATTTATTCTAGGAACTGAGATTTGGATTTATATAGTTTTTGGCAAGCTGCTGTAGGAACAGCTGCTGTACTTTTTGATGAGTAGAAATGCCAGATGAAAATCTGGTAAATTATCTGTTTTTTGACCGTAATATCATGTTCAAGCATTGTATCTTTTTATTGGTCTTGAGAAAAACTGCTCCGTGTAACAGTAATCAATCCTGTCCAATTGCTATAGGATTGTTGAATATTGCAAAATCTCATGAGTGATTTCAAGTTGT

Ace file of the UniGene biog3_v1.0_unigene11461

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18687	173/174

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 70 (HSP70)-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9RBP6_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	heat shock protein sti-like	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	86%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	86%
Blast2go	response to heat	GO:0009408	Biological Process	86%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock chaperonin-binding	IPR006636	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH2

Fln msg:

Fln protein: MADEAKSKGNAAFSSGNYEEAIKHFSEAIALAPTNHVLYSNRSAAYASLNKYNEALQDAKKTVEIKADWSKGYSRLGAAYVGLGKYDDAISSYKKGLEFDPSNEALKSGLADAQAASRSRAASSPFGNIFQGPEVWAKLTADPKTRLYLQQPDFVKMIQDVQKNPNNINMYLNDQRMMQVLGVLLNVNLRNATSEEDAFEHTSSPKPQPKREPEPQPESEPEPMDIPDEEKEKKARKTEAQKEKELGNAAYKKKDFEVAIQHYSKAMDLDDEDISFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELHSDYKMVARALTRKGTAFVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQQEDFDPKLADEEREKGNEFFKQQQYPEAIKHYTEALRRNPNDARVYSNRAACYTKLAALPEGLKDANKCIELDPSFTKGYSRKAAIQFFMKEYDKALETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSDPVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR*

Protein Length: 570

Fln nts: AGTGACACAACCCATTTCTTTATCGCAGATGTATTAGTTGCTATTTCAGTTGTATGTGGCATGATTCTTGCCCTGCGGCTAACTGGATCCTCGGCGCTTCGTTTATGCTCATCTCTATCTCGGTGTTATTAGCACAAAATCTAGCAAGATAGTTAGGTTTGAAGAAAGAA_-_ATGGCTGATGAAGCAAAATCAAAAGGAAATGCTGCGTTTTCTTCAGGAAACTACGAGGAAGCTATAAAACATTTCTCTGAAGCTATAGCTCTTGCTCCGACCAATCATGTTTTATATTCAAATCGTTCTGCAGCATATGCTTCATTAAATAAGTATAATGAAGCTCTTCAGGATGCTAAGAAGACAGTGGAAATTAAGGCAGATTGGTCCAAGGGCTACAGCAGGCTTGGGGCAGCATATGTTGGGCTTGGAAAATATGATGATGCAATTTCTTCTTACAAAAAGGGCCTGGAGTTTGATCCTTCAAATGAAGCATTAAAATCAGGCCTTGCTGATGCACAGGCAGCAAGTAGATCTCGTGCTGCATCCTCTCCATTTGGAAATATATTCCAGGGGCCAGAAGTGTGGGCAAAATTAACGGCTGACCCAAAAACAAGATTATATTTGCAGCAACCTGATTTTGTTAAGATGATTCAAGATGTTCAGAAAAATCCTAACAACATTAATATGTATCTTAATGATCAACGCATGATGCAGGTTTTGGGTGTGTTACTAAATGTTAACTTACGTAATGCCACATCAGAGGAGGATGCTTTTGAGCATACTAGTTCACCCAAGCCACAGCCAAAACGAGAACCAGAACCTCAGCCAGAGTCAGAGCCAGAACCAATGGATATTCCAGATGAGGAGAAAGAGAAGAAGGCTCGGAAAACAGAGGCACAGAAGGAAAAGGAACTTGGAAATGCAGCTTATAAGAAAAAAGATTTTGAGGTTGCTATTCAGCATTATTCGAAAGCAATGGATCTGGATGATGAAGATATCTCCTTCCTAACAAACAGAGCAGCTGTCTATTTGGAAATGGGGAAGTATGAAGATTGCATTAAAGACTGTGACAAGGCTGTTGAAAGAGGGAGGGAGCTTCATTCAGATTATAAAATGGTTGCACGGGCTTTGACTAGAAAAGGAACTGCATTTGTTAAGATGGCTAAATGTTCAAAGGACTATGAGCCAGCAATTGAAACTTTCCAGAAAGCACTTACAGAACATCGTAATCCAGATACATTGAAGAAACTTAATGAAGCTGAGAAAGCAAAGAAAGATTTGGAACAACAGGAAGATTTTGATCCAAAGTTGGCGGATGAAGAGCGGGAGAAAGGAAACGAATTCTTTAAGCAGCAGCAGTATCCAGAGGCTATAAAGCATTACACTGAAGCTCTTAGAAGAAATCCCAATGATGCAAGGGTATACAGTAACAGAGCAGCTTGCTATACGAAGCTTGCAGCTTTGCCAGAAGGTCTCAAGGATGCAAATAAGTGTATTGAGTTGGATCCATCATTTACAAAAGGCTATTCAAGGAAAGCTGCTATTCAGTTCTTCATGAAAGAATATGACAAAGCCTTGGAAACCTATCAGGAAGGTCTCAAACTTGATGAAAACAACCAGGAACTGTTAGAAGGTGTCCGGAGATGTATTGAGCAAATCAACAAAACCAACAGGGGTGATATAAGCCCCGAGGAAATGAAGGAGAGACAGGCAAAAGCAATGCAAGATCCAGATATTCAGCATATTCTTTCGGATCCTGTTATGAGACAGATTCTAATGGATTTCCAAGAGAACCCAAAGGCAGCACAGGATCATCTGAAGAATCCTGAAGTAATGCATAAGATTCAGAAGCTTGTGAGTGCGGGTATTGTACAAGTGAGATGA___AGAGGGCCATTGTTTTGTTCAGAAAGCTCTTTCTATGAATTTGTAGAGAACACTTACCTTTTGTTTGTATCTGAAAGAGCCTTGAATAAAATGCATGCCAAAATTTATTCTAGGAACTGAGATTTGGATTTATATAGTTTTTGGCAAGCTGCTGTAGGAACAGCTGCTGTACTTTTTGATGAGTAGAAATGCCAGATGAAAATCTGGTAAATTATCTGTTTTTTGACCGTAATATCATGTTCAAGCATTGTATCTTTTTATTGGTCTTGAGAAAAACTGCTCCGTGTAACAGTAATCAATCCTGTCCAATTGCTATAGGATTGTTGAATATTGCAAAATCTCATGAGTGATTTCAAGTTGT

Fln Alignment:

Contig11461___KKEMADEAKSKGNAAFSSGNYEEAIKHFSEAIALAPTNHVLYSNRSAAYASLNKYNEALQDAKKTV----EIKADW---SKGYSRLGAAYVGLGK----YDDAISSYKKGLEFDPSNEALK
A9NUH2__________________RKAEAQKEKELGNAAYKKKDFEIAIKHYTKAMDLDDEDISFLTNRAAVYLEMGKYEECIKDCDKAAERGRELHSDYKMIARALTRKGSAYVKMAKCSKDYEPAIETFQKALTEHRNPDTLK

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
1494		12	87		0.999964
1495	12			81	0.999943
1497			81	18	1.0
1614			88	11	0.999952
1615			88	11	0.999952
1644	14			85	0.999981
1645		14	85		0.999981
1647			85	14	0.999981
1648		85		14	0.999981
1684	10		90		0.90298
1686			90	10	0.90298
1687			90	10	0.90298
1692	11		88		0.923564
1693	88	11			0.923564
1695			88	11	0.923564
1696			88	11	0.923564
1783			90	10	0.90298
1894	10			90	0.90298
1895		10	90		0.90298
1905	11	88			0.923564
1906		11		88	0.923564
1907	11	77			0.968132
1912	11			88	0.923564
1916	88			11	0.923564
1918		11		88	0.923564
1938	12			87	0.992554
1939		12		87	0.992554
1940	12			87	0.992554
1941			87	12	0.992554
1951	14		85		0.993533
1952	85	14			0.993533
1954	85			14	0.993533
1955			85	14	0.993533
1958	16	83			0.994512
1975	20		80		0.995493
1977	20	80			0.995493
1978	80			20	0.995493
1979	80			20	0.995493
2073	25		75		0.996473
2077			75	25	0.996473
2135	14			85	0.993533
2136	14	14		71	0.984337
2138			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain