SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11451

Length: 1735 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11451

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15512	100/247
SustainPine v2.0	sp_v2.0_unigene19009	94/247
SustainPine v2.0	sp_v2.0_unigene60695	47/247
SustainPine v2.0	sp_v2.0_unigene64635	1/247
SustainPine v2.0	sp_v2.0_unigene64763	1/247
SustainPine v2.0	sp_v2.0_unigene65298	2/247

Source	Descriptions	Term	Type	Identity
AutoFact	Glycolate oxidase n=1 Tax=Zantedeschia aethiopica RepID=Q84LB8_ZANAE	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	glycolate oxidase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	glycolate oxidase activity	GO:0008891	Molecular Function	92%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	92%
Blast2go	vacuole	GO:0005773	Cellular Component	92%
Blast2go	peroxisome	GO:0005777	Cellular Component	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%
Blast2go	apoplast	GO:0048046	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	FMN-dependent dehydrogenase	IPR000262	-	-
Sma3	FMN-dependent alpha-hydroxy acid dehydrogenase, active site	IPR008259	-	-
Sma3	Alpha-hydroxy acid dehydrogenase, FMN-dependent	IPR012133	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3		IPR017934	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXW1

Fln msg:

Fln protein: MEIVNVSDYEAVAKEKLPKMVFDYYASGAEDQWTLQENRKAFERIRFRPRILVDVTKVDLSTTVLGFKISMPIMIAPTAMQKMAHPEGEFATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVGQLVKRAERAGFKAIALTVDTPRLGRRESDIKNRFALPPHLTLKNFEGLDLGKMEKTADSGLASYVAGQIDRSLSWKDVKWLQTITSLPILVKGVLTAEDTRLAIQAGVQGIIVSNHGARQLDYVPATISSLEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRNVLKMLRDEFELTMALAGCCSVKEINRNYIQTEADMIRSISRL*

Protein Length: 369

Fln nts: AATGTTTAAATATTATCTGCACGGATTTAGTGGTTAAAAGTCTTATAAAACGGATATTGCAAACTAATCCGGGATGGATGGTTGACAGAATCGCCATTTCCCGGAGCTGGCGATAATAGAGAGCCAACTAAGTAGCCGTCGTAGCAGGGCTTCGCAGAATTCCTCCCCGCGGAGCTAAGATATGATGCCTTTCATGGCTGCTTAGCACCTATTTAAATAGAGCGTTGTGTGATCCAAATCTTGAAGCCTGCTGCTCAACCAAAGATTGGATAGTATCTGTAATTAGAGTTAAGAT_-_ATGGAGATCGTGAACGTTTCCGACTATGAGGCAGTAGCCAAGGAAAAGCTGCCCAAAATGGTATTCGATTACTATGCTTCCGGTGCTGAAGATCAATGGACTCTCCAAGAAAATCGCAAAGCTTTCGAAAGAATAAGGTTCCGTCCCCGTATATTGGTTGATGTAACAAAGGTGGATCTGAGTACCACTGTGTTGGGATTCAAGATATCAATGCCTATTATGATTGCTCCAACTGCCATGCAAAAGATGGCTCATCCCGAAGGAGAGTTTGCTACTGCAAGAGCTGCGTCAGCTGCTGGAACTATAATGACGCTTTCTTCATGGGCTACATCAAGTGTTGAAGAGGTTGCTTCAACTGGACCAGGCATTCGCTTTTTTCAACTTTATGTTTACAAGAATAGGAATGTTGTTGGACAACTTGTTAAAAGAGCGGAGAGGGCTGGTTTTAAGGCAATTGCACTGACTGTGGACACACCTCGACTTGGGCGGAGGGAGTCTGACATTAAAAATAGATTCGCATTGCCTCCACATCTTACTTTAAAGAATTTCGAGGGTTTGGATCTTGGGAAAATGGAGAAGACAGCGGATTCTGGACTGGCATCATATGTTGCTGGTCAAATTGACAGATCATTGAGTTGGAAGGATGTGAAATGGTTGCAGACAATTACCAGTTTGCCAATACTTGTGAAGGGGGTTTTGACTGCTGAGGACACAAGGCTAGCCATCCAAGCAGGCGTACAAGGTATAATTGTATCCAACCATGGAGCTCGACAACTTGATTACGTTCCAGCAACAATAAGCTCTTTGGAAGAGGTTGTAAAAGCCGCACAAGGTCGAGTTCCTGTGTTTCTGGATGGAGGAGTTCGGCGCGGCACTGATGTTTTCAAGGCATTGGCTCTTGGAGCCTCTGGCATATTTATTGGGAGGCCTGTAGTTTTTTCTTTGGCTGCAGAGGGAGAAGCAGGGGTGAGAAATGTTCTGAAAATGTTGCGGGATGAGTTTGAACTAACCATGGCCTTAGCAGGATGCTGTTCAGTGAAGGAGATAAATCGAAATTACATTCAAACTGAGGCCGACATGATTCGATCTATATCAAGGCTCTGA___AAGGCTCTGCTCTCACATGAGTGATTGTTGACCAACAAAGTGAATATGCAATTGCTTGTGCTTTTTAATTTGATATGCACTTATGCAGTAGTTCCAGATATTAGCAATATTGTTAAAACAAGTATATTTTCAGTCTAAGAGCTATGCTGCCAGTAGGATCTATATCTGCTGAGAATTTATTCGGATTCTTCTTCAAAGCTCTGGTGCTTTTGCCTGGAAATCATGTTATTCTGATTAAAATAATTGAAACACTGAGGATTATTACCTCTGCCTCTGCGGTTTCTTGTGCTTTTAAAGTTAGCTTATTCTTGCAATAGCTTTACTGATGATTCTTGG

Fln Alignment:

Contig11451___MEIVNVSDYEAVAKEKLPKMVFDYYASGAEDQWTLQENRKAFERIRFRPRILVDVTKVDLSTTVLGFKISMPIMIAPTAMQKMAHPEGEFXXXXXXXXXGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVGQLVKRAERAGFKAIALTVDTPRLGRRESDIKNRFALPPHLTLKNFEGLDLGKMEKTADSGLASYVAGQIDRSLSWKDVKWLQTITSLPILVKGVLTAEDTRLAIQAGVQGIIVSNHGARQLDYVPATISSLEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRNVLKMLRDEFELTMALAGCCSVKEINRNYIQTEADMIRSISR
A9NXW1__________________MEIVNVSDYEVVAKQKLPKMVFDYYASGAEDQWTLHENRKAFERIRFRPRILIDVTKVDLSTTVLGFKISMPIMIAPTAMQKMAHPEGEFATARASSAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRHVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFSLPPYLTLKNFEGLDLGKMEKTADSGLASYVAGQIDRSLSWKDVKWLQTITNLPILVKGVMTAEDTRLAVQAGVQGIIVSNHGARQLDYVPATISSLEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRNVLQMLRDEFELTMALAGCCSVKEINRNYIQTEADMIRSISR

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
641	25		75		0.996473
642	25			75	0.996473
651	16	83			0.994512
655	83			16	0.994512
720	95	4			0.997218
722	95			4	0.997218
723			95	4	0.997218
832	7			92	0.999602
894		93		6	0.999264
1091	93			6	0.99903
1094	93	6			0.999264
1095	6		93		0.999264
1096		93		6	0.999264
1260	12		87		0.992554
1261		12	87		0.992554
1262	12		87		0.992554
1264			87	12	0.992554
1331	20		80		0.995493
1332		20		80	0.995493
1333	20		80		0.995493
1334	80			20	0.995493
1335	80			20	0.995493
1345		25		75	0.996473
1346	25	75			0.996473
1347			66	33	0.997452
1348	66			33	0.997452
1558	10			90	0.90298
1559	10	90			0.90298
1561	90		10		0.90298
1572	10		90		0.90298
1580	11			88	0.923564
1593		87		12	0.992554
1595	87	12			0.992554
1598		87		12	0.992554
1605	14		85		0.993533
1607	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain