SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11447

Length: 1384 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11447

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15882	209/213
SustainPine v2.0	sp_v2.0_unigene78778	1/213

Source	Descriptions	Term	Type	Identity
AutoFact	ATP synthase gamma chain n=1 Tax=Picea sitchensis RepID=A9NLA3_PICSI	-	-	92%
FL-Next	sp=ATP synthase gamma chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	atp synthase gamma	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, gamma subunit	IPR000131	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLA3

Fln msg:

Fln protein: MASAGLRREVRRLGSLTASGTLKVLTGSPWPQPTIHQAQELPAFGSRTISTQIVRNRMKSVKSIQKITKAMKMVASSKLRAIQTKAENSRGLWQPFTALIGDVPGINVKKNIFLIVTSDKGLCGGINSTSVKISKTFAKIESGPEKEPKYVVVGEKGKSLLQRDSSKNISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNRFQSIVSSAPTVSTVLSAEVVEKESESGGQLGDLDSYEIEGAETKGEVLQNLTEFHIVCALFNACLESACSEQGARMSAMDSSSRNAGEMLDRLTLSYNRTRQASITTELSEIISGAAALTG*

Protein Length: 331

Fln nts: CTTGGAGATGACTGTCTTCCATTACCGAGACGGACATATATAGCTCTTATGCGACTGTCTCAAACCCTTTGAAACACCTTTTTGCTTGAGTTGGTTACGAGATCGAATCTGTTAACA_-_ATGGCTTCAGCTGGCCTCAGGAGAGAAGTAAGGCGCCTGGGCAGTCTGACTGCGTCAGGAACGCTCAAGGTCCTAACAGGATCACCATGGCCGCAGCCTACGATCCACCAGGCACAGGAGTTGCCTGCTTTTGGATCACGAACAATTTCTACTCAAATTGTGAGAAATAGAATGAAAAGTGTAAAGAGTATTCAAAAGATCACAAAGGCAATGAAGATGGTTGCATCATCAAAGTTAAGGGCAATACAAACAAAGGCCGAGAACTCTCGAGGATTATGGCAACCATTCACTGCATTGATTGGCGATGTTCCTGGGATTAATGTGAAGAAGAACATTTTTCTTATTGTTACCTCTGACAAAGGTCTTTGTGGTGGTATCAACTCCACATCTGTGAAGATAAGCAAGACATTTGCAAAGATTGAATCAGGTCCAGAAAAAGAGCCAAAATATGTTGTAGTTGGGGAAAAGGGCAAGTCACTGTTGCAGCGTGATTCAAGCAAAAATATTAGCCTGTCTGTAGGAGAAATGCAAAAGAATCCAATTAACTTTACACAGGTATCTATGCTTGTGGATGACATTTTGAAGAATGTGGAGTTTGATGCTGTAAGAATCATTTTCAACAGATTTCAGTCAATAGTCTCATCTGCACCAACTGTGTCCACTGTATTATCTGCTGAGGTTGTTGAGAAAGAGTCTGAATCAGGAGGACAACTTGGTGACTTAGATTCTTATGAAATTGAAGGAGCTGAAACAAAAGGAGAAGTGCTGCAAAATCTTACTGAATTTCACATTGTTTGTGCTTTGTTCAATGCTTGTTTGGAAAGTGCTTGTAGTGAACAAGGAGCCAGAATGTCTGCTATGGACAGCTCTAGCAGAAATGCTGGTGAGATGCTTGATCGGTTAACCCTGTCTTATAACAGAACTCGTCAAGCTTCGATTACAACAGAATTGTCAGAGATTATTTCTGGTGCTGCGGCTTTAACAGGATAA___AACTTGATTGACATCAGTTGCTTGACAGAATGTGGCTTATGTTTGTTCATATACCCCAAGAAGCATTTTATTGAATCGTGAGATTGATTTTTAAAATTTTGCATGGGGTGAAACTTGCACAATGGGAAAATAAATTCTAATAATTATGAATGCATGACAGTTCTTTGAAGGAGAGTCTGGTTCATGGTTCTCCGTTATTCTAAATTGAATCGAGAGCTTGAATAAGTATTTTTTGGAATTGGTTTTAACATTTTTTACAACTACTAAAGATTATTCA

Fln Alignment:

Contig11447___MASAGLRREVRRLGSLTASGTLKVLTGSPWPQPTIHQAQELPAFGSRTISTQIVRNRMKSVKSIQKITKAMKMVASSKLRAIQTKAENSRGLWQPFTALIGDVPGINVKKNIFLIVTSDKGLCGGINSTSVKISKTFAKIESGPEKEPKYVVVGEKGKSLLQRDSSKNISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNRFQSIVSSAPTVSTVLSAEVVEKESESGGQLGDLDSYEIEGAETKGEVLQNLTEFHIVCALFNACLESACSEQGARMSAMDSSSRNAGEMLDRLTLSYNRTRQASITTELSEIISGAAALTG
A9NLA3__________________MASAFLRREARRLGSLTASGTLKALTGSPWPQSAIHQTQELPAFGSRTISTQIVRNRMKSVKSIQKITKAMKMVASSKLRAIQIKTENSRGLWQPFTALIRDVPGISVKKNVFLIVTSDKGLCGGINSTSVKISKTFAKLESGPEKEPKYIVLGEKGKSILQRDSSKDISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNRFQSIVSFVPTVSTILSAEVAEKESEAGGTLGDLDSYEIEGSETKAEVLQNLSEFHIVCALFNACLESSCSEQGARMSAMDSSSRNAGEMLDRLTLSYNRTRQASITTELSEIISGAAALTG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1093	8		92		0.999718
1095	8			91	0.999807
1107	90	9			0.999872
1180	10		90		0.90298
1181	90	10			0.90298
1184		90		10	0.90298
1185	11		88		0.923564
1187			88	11	0.923564
1193		25	75		1.0
1330	10			90	0.90298
1331	90	10			0.90298
1333			90	10	0.90298
1337	25			75	0.996473
1338		25		75	0.996473
1339	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain