SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11443

Length: 1657 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11443 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18255	245/247

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit 6 n=3 Tax=Zea mays RepID=B6TRV3_MAIZE	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	91%
Blast2go	flower development	GO:0009908	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	signalosome	GO:0008180	Cellular Component	91%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSI7

Fln msg:

Fln protein: MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDEQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQEMTDRRIEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRTFCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFASPLNQLQNRTWLMHWSLFIFFNHENGRNGIIDLFFQERYLNAIQTNAHHLLRYLATAVVVNKRRRNMLKELIKVIQQEQYTYKDPITEFLECLYVNYDFEGAQQKLVECEKVILNDPFLGKQVQEGNFVTVPLRDEFLENARLFIFETYCRIHQCIDIRMLAEKLSMSYDEAERWIVNLVKNAKLDAKIDSTSGTVVMGTNHTNVYEQIIENTKQLSMRTYVLANNVASIAVPVTQVPTIR*

Protein Length: 443

Fln nts: GCTCTTTGCAGTCTAAATTCGAAATCACCCGAAACCCTTGTGCGAGGAAGCAACTGCAGCA_-_ATGGCGGAGTACGATCTAACATCGAAGATTGCTCCCCATCTGGACCGCCATCTTGTTTTCCCACTTCTGGAGTTTCTGCAGGAGAAACAGCTCTATCCGGACGAACAAATTCTCAAGTCGAAGATCGACCTTCTCAGCAAAACCAACATGGTCGACTACGCCATGGACATCCACAAGAGTCTTTACCGCACCGAAGACGTTCCACAAGAAATGACAGACAGGCGCATTGAAGTAGTTGCAAGACTAAAGTCATTGGAAGAAATGGCTGCACCACTGATTAGTTTTCTACAGAATCCATCACTTGTTCAGGAGCTTCGTTCTGATAAACAATATAATCTCCAGATGCTGAATGATCGGTACCAGATTGGACCTAACCAGATAGAGGCGCTATACCAATATGCTAAGTTTCAGTTTGAATGCGGAAACTACTCGGGGGCAGCAGATTTTTTATACCAATATCGCACTTTTTGTACGAACAGTGAAAGGAGTTTGAGTGCCTTGTGGGGCAAGCTTGCAGCAGAGATTCTGATGCAAAATTGGGATATTGCTCTGGAAGAGCTTAATCGGTTGAAAGAAATTATTGATTCTAAGAATTTTGCATCACCCCTCAATCAATTACAAAATAGGACATGGTTGATGCATTGGAGTCTCTTTATTTTCTTCAATCATGAGAATGGCAGGAATGGGATCATAGATCTCTTTTTCCAAGAGAGGTATTTGAATGCAATCCAGACAAATGCACACCATCTTCTTCGTTATCTTGCTACTGCAGTGGTTGTTAATAAGAGGAGGAGAAATATGCTGAAGGAGCTGATTAAAGTTATCCAGCAAGAGCAATATACTTATAAAGATCCTATCACAGAATTTTTGGAATGTTTGTATGTAAACTATGATTTTGAAGGGGCGCAGCAGAAACTTGTTGAGTGTGAAAAAGTAATACTGAATGATCCTTTCCTCGGTAAGCAAGTTCAGGAGGGCAATTTTGTTACAGTGCCTCTGAGGGACGAGTTTCTTGAAAATGCACGGCTTTTCATTTTTGAGACATATTGTCGCATTCATCAATGTATTGACATACGAATGCTTGCTGAAAAACTCAGTATGAGCTATGATGAAGCAGAGCGATGGATAGTGAACCTTGTAAAGAATGCAAAGTTGGATGCTAAAATTGATTCGACATCAGGGACTGTGGTCATGGGAACTAACCACACAAATGTGTACGAGCAAATTATAGAGAATACAAAACAGTTGTCTATGCGAACATATGTGTTGGCAAATAATGTTGCTTCAATTGCTGTGCCTGTCACTCAAGTGCCTACTATTCGATAG___AGATTTGAAATTAACAAGGTCGATGCTGCGAAAGGTTGAGTTCGATGCAGGGAAACTTTGAGGTTTTCCTTTGCAAAATTGATTGAATTTCTAGAAGTTAAGTTTGCGTTTTTTTGTTGATGACGTTTGCCAGAGCTAATCAGCGCAATTGTAACCCAACTATTATTTAACCCATTTTTTTTGGTGAATTTGAAAAACGCCTGGAATGGATTAAAATAATTGCTTTATAAAGAACAGGCAGAAGTCACTGCGTGTTGTATTTTTGACATT

Fln Alignment:

Contig11443___MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDEQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQEMTDRRIEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRTFCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFASPLNQLQNRTWLMHWSLFIFFNHENGRNGIIDLFFQERYLNAIQTNAHHLLRYLATAVVVNKRRRNMLKELIKVIQQEQYTYKDPITEFLECLYVNYDFEGAQQKLVECEKVILNDPFLGKQVQEGNFVTVPLRDEFLENARLFIFETYCRIHQCIDIRMLAEKLSMSYDEAERWIVNLVKNAKLDAKIDSTSGTVVMGTNHTNVYEQIIENTKQLSMRTYVLANNVASIAVPVTQVPTIR
C0PSI7__________________MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDDQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQDMTDRRVEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRTFCTNSDRSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFSSPLNQLQNRTWLMHWSLFIFFNHENGRNGIIDLFFQERYLNAIQTNAHHLLRYLATAVVVNKRRRNMLKELIKVIQQEQYTYKDPITEFLECLYVNYDFEGAQQKLVECEKVILNDPFLGKQVQEGNFVTVPLRDEFLENARLFIFETYCRIHQCIDIRMLAEKLSMSYDEAERWIVNLVKNAKLDAKIDSTSGTVVMGTNHTNVYEQIIENTKQLSMRTYVLANNVASMAVPVTQVPTIR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1059	3	96			0.983282
1062	96			3	0.984346
1105		93		6	0.99903
1144	7			92	0.999602
1145		7		92	0.999602
1146	7		92		0.999602
1147			92	7	0.999602
1279	86			13	0.999973
1352	16			83	0.999991
1360	10			90	0.90298
1364	90			10	0.90298
1365		90		10	0.90298
1428	10		90		0.90298
1429		10	90		0.90298
1432			90	10	0.90298
1530	11	88			0.923564
1533			90	10	0.90298
1534	90			10	0.90298
1540	12		87		0.992554
1541	85	14			0.993533
1543	85			14	0.993533
1544	85			14	0.993533
1654	50	50			1.0
1655	66	33			0.997452
1656	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain