SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11433

Length: 2239 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11433
AATGTAAAAACAAAGTTGAGAGAGAATGGCACAGATACAAGTCCAGCCCCAAAACCCTGGTGTTTCACAGCTGCAGCAGGTTGTTGGGAATGGCAGCAACAATCTGCCCAGTCGATTCGGAGCTGCGTCTCTGTATGTGTGCGATCTGGAGCCCCGTGTTTTGGAAAGCCAGATTTTTGACGTATTCGAGAAGTGTGGTCCCGTTCACTCTCTTCACATCTGCAGAGATATAAGCACCAGGAGTTCTCTTGGATACGCTTATGTCAATTACGGCAATAATGAAAATGCTAGCAGGGCTTTAGATCAGTTGAATTTTACACCTCTTAATGGAAAGCCTATTCGGGTAATGTATTCACATCGTGACCCCAGCATCCGCAAGAGTGGATCAGCAAACATATTTATTAAGAATCTTGACAAAGCAATAGACAATAAAGCTCTCTATGGTACTTTCTGTGTGTTTGGACTTATTCTCTCTTGTAAGGTTGCAATAGATGGATCGGGACAATCTAAAGGATATGGATTTGTGCAATTTGAGCAAGATGAAGCAGCACAAAATGCAATAGAAAAATTGAATGGTATGTTGATAAATGACAAACAGGTTTATGTTGGACCATTCATGAGCAAGGAGGAGCGAGAGCAAGCAAATGGAAAAGCCAAGTTTAATAATGTTTTTGTTAAGAATTTATCGGAGTCTGTAAATGAGGAGGATTTGAGGATTTGTTTTGGTGAGTATGGAAAAATTACTAGTGTTGTAGTGATGAGGGATGCAGAGGGAAAGTCAAAGTGTTTTGGATTTGTCAATTTTGAGAATGCAGATGATGCGGCAAATTGTGTTGAAAGCTTAAATGGCAAGAAAATTGATGGCAAGGAATGGTATGTTGGAAAAGCACAGAAGAAGTCTGAGAGGGAGTCTGAATTGAGGGGGCGATTTGAAAAGCTGTTGAAGGAGAGGCTTGAAAAGTTCCAAGGAGCAAATCTTTACTTAAAAAATTTGGATGATAGCATTGATGATGAAAGGTTAAGAGAACTGTTCTCTGCTTATGGTACAATCACTTCCTGCAAGGTAATGAGGGATTTTCATGGACACAGTAAAGGTTCAGGATTTGTTGCCTTCTCATCTCCTGATGAAGCATCCCGAGCTCTCGCAGAAATGAATGGGAAACTTGTTATCAGCAAGCCTCTTTATGTTGCTCTGGCTCAGCGCAAAGAGGAGAGAAGGGCAAGACTACAGGCTCAGTTCTCCCAATTGCGGAATCCAGTTGGAATAACTCCAGCCGTTCCTGCCCGTGTTCCTATTTACCCTCCCGGAGGTCCTGGACTAAACCAACAGATATTTTATGGCCAAGGACCACCTGCACTTATCCCTCCTCAAGCTGCTGGATTTGGTTATCAGCAACAACTAATCCCAGGTATAAGGCCAGGAGGTGGACCTATGCCCAATCTCTATTTTCCTCTCATGCAGCCTCAACAGGGTCAGCGTCCAGGTGGCAGGAGAGGTGGTTTAACACCCATACAACAGCAACCACAGCAGCAGCTACCACTTATACAGCAGCAGATGCTACCTCGTGGTAATCGCCTATATCGTTACCCACCTGGAAGGAATGTTAATGAAATTCCCTTATCTGGAGTTGCGGGAGGGATACATCCTTTACCATCATTAGATATGGGCAACCTTTCTTTACGTGCAGCAGCTGAGACAACAATTTCACAGCCTATACCTATTGGAGCTTTGGCTTCAGCTCTTCCAAATGCAAGTCCGGAACAACAACGAACGATGCTTGGAGAAAGCTTGTATCCTTTGGTGGATCAGTTGGAACATGATCATGCAGCCAAAGTTACTGGTATGCTTTTGGAAATGGACCAAACTGAGGTTCTTCATTTGTTGGAGTCTCCTGAAGCCTTGAAGGCTAAAGTTGCAGAAGCGATGGAGGTTCTACGGAATGTGGCACAAGCTCCACAAACTCCCGCTGATCAGCTTGCAGCGTTATCTTTGAATGAGACTCTTGTGTCGTAATGTCATGTTGGTTGTACCATATTTATTTTTGGATTGGACTCGTATTGAGGTACTTGTTAGTTACATTACTAGTTAGATTACTATTTAGAACGGATAAGAATAGTTCAGAGCGTTAAGAGCTTGTTTTGGCTTGTCTTAGATTTTAAGGTAAAACAGTGTTATGAAAATTATATTTCCGTACTCAGGGAAAGTACCTATCTGTTGGTTATGACTATACTTTACATT

Ace file of the UniGene biog3_v1.0_unigene11433 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14886	249/275
SustainPine v2.0	sp_v2.0_unigene16605	16/275
SustainPine v2.0	sp_v2.0_unigene17893	5/275
SustainPine v2.0	sp_v2.0_unigene19652	1/275
SustainPine v2.0	sp_v2.0_unigene21620	2/275
SustainPine v2.0	sp_v2.0_unigene69475	1/275
SustainPine v2.0	sp_v2.0_unigene78563	1/275

Source	Descriptions	Term	Type	Identity
AutoFact	poly(A)-binding protein [Cucumis sativus]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	poly -binding protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Polyadenylate-binding protein/Hyperplastic disc protein	IPR002004	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Transferase	IPR003480	-	-
Sma3	Polyadenylate binding protein, human types 1, 2, 3, 4	IPR006515	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, puromycin-sensitive aminopeptidase	IPR015568	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S1

Fln msg: your sequence is longer than subject: 663 - 313

Fln protein: MAQIQVQPQNPGVSQLQQVVGNGSNNLPSRFGAASLYVCDLEPRVLESQIFDVFEKCGPVHSLHICRDISTRSSLGYAYVNYGNNENASRALDQLNFTPLNGKPIRVMYSHRDPSIRKSGSANIFIKNLDKAIDNKALYGTFCVFGLILSCKVAIDGSGQSKGYGFVQFEQDEAAQNAIEKLNGMLINDKQVYVGPFMSKEEREQANGKAKFNNVFVKNLSESVNEEDLRICFGEYGKITSVVVMRDAEGKSKCFGFVNFENADDAANCVESLNGKKIDGKEWYVGKAQKKSERESELRGRFEKLLKERLEKFQGANLYLKNLDDSIDDERLRELFSAYGTITSCKVMRDFHGHSKGSGFVAFSSPDEASRALAEMNGKLVISKPLYVALAQRKEERRARLQAQFSQLRNPVGITPAVPARVPIYPPGGPGLNQQIFYGQGPPALIPPQAAGFGYQQQLIPGIRPGGGPMPNLYFPLMQPQQGQRPGGRRGGLTPIQQQPQQQLPLIQQQMLPRGNRLYRYPPGRNVNEIPLSGVAGGIHPLPSLDMGNLSLRAAAETTISQPIPIGALASALPNASPEQQRTMLGESLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQAPQTPADQLAALSLNETLVS*

Protein Length: 664

Fln nts: AATGTAAAAACAAAGTTGAGAGAGA_-_ATGGCACAGATACAAGTCCAGCCCCAAAACCCTGGTGTTTCACAGCTGCAGCAGGTTGTTGGGAATGGCAGCAACAATCTGCCCAGTCGATTCGGAGCTGCGTCTCTGTATGTGTGCGATCTGGAGCCCCGTGTTTTGGAAAGCCAGATTTTTGACGTATTCGAGAAGTGTGGTCCCGTTCACTCTCTTCACATCTGCAGAGATATAAGCACCAGGAGTTCTCTTGGATACGCTTATGTCAATTACGGCAATAATGAAAATGCTAGCAGGGCTTTAGATCAGTTGAATTTTACACCTCTTAATGGAAAGCCTATTCGGGTAATGTATTCACATCGTGACCCCAGCATCCGCAAGAGTGGATCAGCAAACATATTTATTAAGAATCTTGACAAAGCAATAGACAATAAAGCTCTCTATGGTACTTTCTGTGTGTTTGGACTTATTCTCTCTTGTAAGGTTGCAATAGATGGATCGGGACAATCTAAAGGATATGGATTTGTGCAATTTGAGCAAGATGAAGCAGCACAAAATGCAATAGAAAAATTGAATGGTATGTTGATAAATGACAAACAGGTTTATGTTGGACCATTCATGAGCAAGGAGGAGCGAGAGCAAGCAAATGGAAAAGCCAAGTTTAATAATGTTTTTGTTAAGAATTTATCGGAGTCTGTAAATGAGGAGGATTTGAGGATTTGTTTTGGTGAGTATGGAAAAATTACTAGTGTTGTAGTGATGAGGGATGCAGAGGGAAAGTCAAAGTGTTTTGGATTTGTCAATTTTGAGAATGCAGATGATGCGGCAAATTGTGTTGAAAGCTTAAATGGCAAGAAAATTGATGGCAAGGAATGGTATGTTGGAAAAGCACAGAAGAAGTCTGAGAGGGAGTCTGAATTGAGGGGGCGATTTGAAAAGCTGTTGAAGGAGAGGCTTGAAAAGTTCCAAGGAGCAAATCTTTACTTAAAAAATTTGGATGATAGCATTGATGATGAAAGGTTAAGAGAACTGTTCTCTGCTTATGGTACAATCACTTCCTGCAAGGTAATGAGGGATTTTCATGGACACAGTAAAGGTTCAGGATTTGTTGCCTTCTCATCTCCTGATGAAGCATCCCGAGCTCTCGCAGAAATGAATGGGAAACTTGTTATCAGCAAGCCTCTTTATGTTGCTCTGGCTCAGCGCAAAGAGGAGAGAAGGGCAAGACTACAGGCTCAGTTCTCCCAATTGCGGAATCCAGTTGGAATAACTCCAGCCGTTCCTGCCCGTGTTCCTATTTACCCTCCCGGAGGTCCTGGACTAAACCAACAGATATTTTATGGCCAAGGACCACCTGCACTTATCCCTCCTCAAGCTGCTGGATTTGGTTATCAGCAACAACTAATCCCAGGTATAAGGCCAGGAGGTGGACCTATGCCCAATCTCTATTTTCCTCTCATGCAGCCTCAACAGGGTCAGCGTCCAGGTGGCAGGAGAGGTGGTTTAACACCCATACAACAGCAACCACAGCAGCAGCTACCACTTATACAGCAGCAGATGCTACCTCGTGGTAATCGCCTATATCGTTACCCACCTGGAAGGAATGTTAATGAAATTCCCTTATCTGGAGTTGCGGGAGGGATACATCCTTTACCATCATTAGATATGGGCAACCTTTCTTTACGTGCAGCAGCTGAGACAACAATTTCACAGCCTATACCTATTGGAGCTTTGGCTTCAGCTCTTCCAAATGCAAGTCCGGAACAACAACGAACGATGCTTGGAGAAAGCTTGTATCCTTTGGTGGATCAGTTGGAACATGATCATGCAGCCAAAGTTACTGGTATGCTTTTGGAAATGGACCAAACTGAGGTTCTTCATTTGTTGGAGTCTCCTGAAGCCTTGAAGGCTAAAGTTGCAGAAGCGATGGAGGTTCTACGGAATGTGGCACAAGCTCCACAAACTCCCGCTGATCAGCTTGCAGCGTTATCTTTGAATGAGACTCTTGTGTCGTAA___TGTCATGTTGGTTGTACCATATTTATTTTTGGATTGGACTCGTATTGAGGTACTTGTTAGTTACATTACTAGTTAGATTACTATTTAGAACGGATAAGAATAGTTCAGAGCGTTAAGAGCTTGTTTTGGCTTGTCTTAGATTTTAAGGTAAAACAGTGTTATGAAAATTATATTTCCGTACTCAGGGAAAGTACCTATCTGTTGGTTATGACTATACTTTACATT

Fln Alignment:

Contig11433___MRDAEGKSKCFGFVNFENADDAANCVESLNGKKIDGKEWYVGKAQKKSERESELRGRFEKL
D5A9S1__________________MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQL

SNPs (tot: 89)

Position	A %	C %	G %	T %	Probability
251	66			33	0.997452
323	14			85	0.993533
324	14		85		0.993533
325		85		14	0.993533
326	85		14		0.993533
353	18	81			0.999994
355		81		18	0.999994
660			18	81	0.999994
665	15		84		0.999986
816	10	90			0.90298
817		90		10	0.90298
818			10	90	0.90298
819		90		10	0.90298
843		10		90	0.90298
844	10		90		0.90298
847	10		90		0.90298
848	10	90			0.90298
1162			90	10	0.90298
1172	10	90			0.90298
1203		77	22		0.999999
1287	25		75		0.996473
1447	80			20	0.995493
1498		75		25	0.996473
1511	20	80			0.995493
1513		80	20		0.995493
1514	80			20	0.995493
1521		25		75	0.996473
1640	66	33			0.997452
1643		66		33	0.997452
1687			75	25	0.996473
1690		75	25		0.996473
1692	20		80		0.995493
1693	20	80			0.995493
1739	20			80	0.995493
1741	20	80			0.995493
1742		80		20	0.995493
1743			80	20	0.995493
1757	75		25		0.996473
1769	20		80		0.995493
1770	80			20	0.995493
1772	80			20	0.995493
1776	80		20		0.995493
1786		80		20	0.995493
1788		80	20		0.995493
1793	83			16	0.994512
1797		83		16	0.994512
1801	16		83		0.994512
1881		12		87	0.992554
1921	14		85		0.993533
1922		14		85	0.993533
1923	14		85		0.993533
1925	85			14	0.993533
1936		83	16		0.994512
1949		83	16		0.994512
1957		83		16	0.994512
1969		14	85		0.993533
1981	88			11	0.923564
2001		85		14	0.993533
2011		12		87	0.992554
2025		14		85	0.993533
2029		14	85		0.993533
2034	14			85	0.993533
2039	14		85		0.993533
2040			85	14	0.993533
2041			85	14	0.993533
2046	16	83			0.994512
2047	83			16	0.994512
2050			16	83	0.994512
2053		83	16		0.994512
2059	16	83			0.994512
2060		16	83		0.994512
2064	80			20	0.995493
2074		20		80	0.995493
2075			20	80	0.995493
2078		80	20		0.995493
2079	80		20		0.995493
2080	80			20	0.995493
2086			80	20	0.995493
2101	37	62			1.0
2117	37	62			1.0
2119		37		62	1.0
2121	62	37			1.0
2127		37	62		1.0
2130		37		62	1.0
2169	50			50	1.0
2184	11		88		0.923564
2185		12	87		0.992554
2186	12		87		0.992554
2197			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain