SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11424

Length: 1813 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11424 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17057	13/386
SustainPine v2.0	sp_v2.0_unigene25238	362/386
SustainPine v2.0	sp_v2.0_unigene62334	9/386
SustainPine v2.0	sp_v2.0_unigene63866	2/386

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate dehydrogenase [NADP] n=4 Tax=Pinaceae RepID=B8LKH5_PICSI	-	-	95%
FL-Next	sp=Isocitrate dehydrogenase [NADP]; Pinus pinaster (Maritime pine).	-	-	99%
Blast2go	isocitrate dehydrogenase	-	-	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate dehydrogenase NADP-dependent, eukaryotic-type	IPR004790	-	0.0	-
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A0AR16

Fln msg:

Fln protein: MASEKIKVENPIVEMDGDEMTRVIWTMIKDKLIFPFVELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFDLKAMWKSPNGTIRNILNGTVFREPILCKNVPKLVPGWTKAICIGRHAFGDQYKATDTVIKGPGKLKLVFVPEKDGETSELEVYNFKGDGGVALAMYNTDESIRSFAEASMTVAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESNWKSKYEKAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDGNARLLEFAEKLEVACVGTVEAGKMTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPKSS*

Protein Length: 419

Fln nts: AATGTACTCGGGCTTCGCTTAGCCATTTCTGAGTTTGGCCATAGCGATTTTTTCCATTGGATCGTGATTTTGGATCAGTAAGTCCCCGAGGTGGCCTGGGATCGGTTCCTGGACTTCTTTGTCTTCAATTTCTTTCTGCTATCACA_-_ATGGCGTCGGAGAAGATCAAGGTGGAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACCAGGGTCATATGGACAATGATTAAGGACAAGCTTATTTTTCCATTTGTAGAGCTGGATATTAAGTATTTTGATTTGGGGCTTCCCCATCGCGATGCTACAGATGACAAGGTTACAATTGAGAGTGCAGAAGCCACATTAAAATACAATGTGGCCATCAAGTGTGCAACTATCACACCAGATGAAGCTCGAGTCAAGGAATTCGACTTGAAGGCTATGTGGAAGAGTCCCAATGGGACTATCCGTAACATTTTGAATGGTACCGTGTTCAGAGAGCCAATCTTATGTAAGAACGTCCCTAAGCTTGTTCCAGGATGGACAAAGGCCATATGTATTGGAAGACATGCTTTTGGTGACCAATACAAAGCAACAGATACAGTTATCAAGGGCCCTGGCAAGCTGAAATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACATCTGAGTTAGAGGTGTACAACTTCAAAGGTGATGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCGATACGTTCATTTGCTGAGGCTTCAATGACCGTGGCCTATGAGAAGAAGTGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACGATGGAAGGTTCAAAGATATTTTCCAAGAGGTCTATGAATCCAACTGGAAAAGTAAATATGAAAAAGCAGGAATCTGGTATGAACATAGGCTTATCGATGACATGGTAGCCTATGCATTAAAGAGTGAAGGGGGCTATGTATGGGCGTGCAAAAATTACGATGGTGATGTACAGAGTGATTTCTTGGCACAGGGATTTGGATCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATCGAGGCCGAAGCAGCTCATGGCACTGTTACTCGGCATTACCGCGTACATCAAAAGGGAGGTGAAACTAGCACGAACAGCATTGCTTCTATTTTTGCATGGACACGTGGGCTTGCACACAGGGCAAAACTGGACGGAAATGCAAGGCTACTTGAATTTGCAGAGAAGCTGGAAGTTGCTTGTGTAGGTACTGTTGAGGCCGGAAAAATGACAAAAGACTTGGCGCTAATTATTCACGGTTCCAACCTTTCCAGGGAGCACTACCTAAACACTGAAGAGTTTATTGACGCAGTGGCAGCCGATCTGAAAATAAGACTTTCTGCAAAACCAAAGAGTTCTTAA___GGGATTGTGAAATGTGTGGCGATTTTGATCCTGCAAGAGTTGTTTGAAGTCGTAGGTCAGTCAGCTACTAGGGGAAATGCATGTGGCCCATGGAATATCTGTTGTGACATTTGAAAGGAAAAACATTGGCTGTGTTTCCAATTTAAAACTTTACGGTTGCAATAGTCATTGCTATGTTTCGAGGGATTATTTCCTCTTAAATCTTAATACTCCTGCACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCGGCTACACAAGCGCACAAGAATAAATATTGTTTTAACTAGAAACTCCAAAGTAGATAGCAGACAGCAAAATTGTATGCATAATGTATGCATAATTTAACCCTGGATAGGTACGCTTGATTGAATGGATTCAAAGTGTCTGCATGTGTTGTTCTTAAG

Fln Alignment:

Contig11424___MASEKIKVENPIVEMDGDEMTRVIWTMIKDKLIFPFVELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFDLKAMWKSPNGTIRNILNGTVFREPILCKNVPKLVPGWTKAICIGRHAFGDQYKATDTVIKGPGKLKLVFVPEKDGETSELEVYNFKGDGGVALAMYNTDESIRSFAEASMTVAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESNWKSKYEKAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDGNARLLEFAEKLEVACVGTVEAGKMTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPKSS
A0AR16__________________MASEKIKVENPIVEMDGDEMTRVIWTMIKDKLIFPFVELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFDLKAMWKSPNGTIRNILNGTVFREPILCKNVPKLVPGWTKAICIGRHAFGDQYKATDTVIKGPGKLKLVFVPEKDGETSELEVYPFKGDGGVALAMYNTDESIRSFAEASMTVAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESNWKSKYEKAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDGNARLLEFAEKLEVACVGTVEAGKMTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPKSS

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1044	33		66		0.997452
1047			66	33	0.997452
1092	75			25	0.996473
1093	75			25	0.996473
1096	20			80	0.995493
1099		80	20		0.995493
1100			80	20	0.995493
1178	18	81			1.0
1179		81		18	1.0
1180	81		18		1.0
1339			94	5	0.9982
1551		92		7	0.999602
1571	73			5	1.0
1671	10			89	0.999919
1672		10	89		0.999919
1675	89			10	0.999919
1680	81	12		6	0.999943
1788	85	14			0.993533
1791			85	14	0.993533
1798	16	83			0.994512
1799		16	83		0.994512
1801	83			16	0.994512
1802		16	66	16	0.988813
1803		50	50		1.0
1804		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain