SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11422

Length: 1697 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11422

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15513	371/379
SustainPine v2.0	sp_v2.0_unigene17066	5/379
SustainPine v2.0	sp_v2.0_unigene80821	1/379
SustainPine v2.0	sp_v2.0_unigene81662	1/379

Source	Descriptions	Term	Type	Identity
AutoFact	Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI	-	-	91%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	probable fructose-bisphosphate aldolase chloroplastic-like	-	-	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC9

Fln msg:

Fln protein: MAAASGAVLKTPLSLRKSEWMGQALRPTSVNTSAQFQSYNATALSVRAGAYSEELIKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRQLLVSAPGLGQYISGAILFEETLYQSSTEGKKIVDILVQQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRCAEYYKQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHGIERTNEVALKVWSEVFFYLAENNVLFEGILLKPSMVTPGAECKERASPETVAQYTLNLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVDAAQKILLVRAKANSLAQLGKYSAEGESAESKEGMFVKGYTY*

Protein Length: 400

Fln nts: GGACACGCGAGACTTGCCCGTCAAAGGGAAAAGAAGTGCCGATTGCATTGCTCCTGCGACCTGATCTCATTCCCTATTGTCTGTTATTTCAATTCCTGCA_-_ATGGCGGCCGCTAGTGGAGCCGTGCTGAAGACACCTCTCAGCCTGAGAAAATCCGAATGGATGGGTCAGGCCCTCAGGCCGACGTCGGTGAATACTTCGGCCCAGTTCCAATCCTACAACGCTACTGCTCTCAGCGTCCGGGCCGGGGCTTACAGCGAAGAGTTGATCAAGACGGCGAAAACAGTGGCGTCTCCCGGGAGAGGCATCCTGGCGATGGACGAGTCCAACGCCACCTGCGGGAAACGGCTGGCGTCCATCGGGCTTGAGAACACGGAGGCGAACCGACAGGCATACAGGCAGCTGCTCGTCAGCGCGCCGGGTCTCGGACAGTACATCTCCGGCGCCATTCTCTTCGAGGAAACTCTGTACCAGTCCAGCACCGAAGGCAAGAAGATCGTAGACATCCTCGTGCAGCAGAACATAGTGCCCGGCATCAAAGTCGACAAGGGTCTGGTTCCTTTGGCTGGTTCAAACGACGAATCTTGGTGCCAAGGCCTAGACGGCCTCGCATCAAGGTGCGCTGAGTATTATAAGCAAGGAGCTCGCTTCGCCAAATGGCGTACAGTTGTGAGCATTCCCAACGGCCCCTCTGCTCTGGCCGTGAAAGAAGCTGCATGGGGTCTCGCCCGCTACGCGGCAATTGCTCAGGACAACGGTCTGGTTCCCATAGTGGAGCCAGAGATCCTGTTGGATGGAGAACACGGCATTGAGAGGACTAACGAAGTAGCGCTGAAGGTGTGGTCCGAGGTGTTCTTCTACTTAGCAGAGAACAACGTGCTGTTCGAAGGCATTCTGCTGAAGCCGAGCATGGTTACCCCTGGTGCCGAGTGTAAGGAGAGGGCCAGTCCCGAAACTGTTGCCCAATATACCCTGAACCTTCTCCGAAGAAGAGTTCCACCGGCCGTTCCTGGAATCATGTTCTTGTCTGGTGGGCAATCTGAGGTGGAGGCGACCTTGAACTTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTATCATTCTCATATGCTCGTGCTCTGCAAAACACTTGCCTCAAGACATGGGGTGGCAGGCCCGAGAACGTGGACGCAGCCCAGAAGATCCTGCTGGTTCGGGCAAAGGCCAACTCCCTTGCACAGCTTGGCAAATACTCTGCTGAAGGCGAGTCTGCGGAGTCGAAGGAGGGAATGTTCGTGAAGGGCTACACTTATTAA___GCATACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGTTACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGCCACTAGTCCAGTGCGGTGGAGTCTAGTATAGTATGGTTGAAAAACATAGTTTTGCTCTATTTGAGCTTTGCTATATAGTTAGGCGTTTCATGCTGTTTTTGTAAGGTCACTATAATATGAACTTGTGTATTACATAATTGAGACAAGGGGAGGTCGTGGTCGATAGCTACCAGAATTGTATTTTAACTCCAAAATCGAAACACATGTTCAGCTTATGATGCGTATTTTCAGCTTGAATTCAGTGTTTTCTTTTCTTAATAAATAAATTCATGGACATTGATCCTTCAGCAAAACATT

Fln Alignment:

Contig11422___MAAASGAVLKTPLSLRKSEWMGQALRPTSVNTSAQFQSYNATALSVRAGAYSEELIKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRQLLVSAPGLGQYISGAILFEETLYQSSTEGKKIVDILVQQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRCAEYYKQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHGIERTNEVALKVWSEVFFYLAENNVLFEGILLKPSMVTPGAECKERASPETVAQYTLNLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVDAAQKILLVRAKANSLAQLXXXXXXXXXXXXXXXMFVKGYT
A9NUC9__________________MAAATGAVLKTALSLRKSEWMGQALRPTSVNTSAQSQSYNATALSVRAGAYSEELIKTAKRVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRQLLVSAPGLGQYISGSILFEETLYQSTTDGKKMVDVLVQQDIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRCAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHGLERTFEVALKVWAEVFFYLAENNVLFEGILLKPSMVTPGAECKDRASPETVAQYTLNLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWAGRPENVDAAQKILLVRAKANSLAQLGKYSAEGESAESKEGMFVKGYT

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1241			97	2	0.971188
1250	2		97		0.975753
1252			97	2	0.975753
1280	3		96		0.99245
1282			96	3	0.99245
1309		3	94	1	0.964041
1311		93		4	0.970804
1338	4		93	2	0.985381
1339		4	95		0.997218
1347			91	2	0.995912
1351	90			9	1.0
1353	6			86	0.994799
1354		6		93	0.999364
1356		93		6	0.999364
1359			92	7	0.999532
1388		3	90	6	0.997544
1439	9		90		0.999842
1470	9			90	0.999842
1584		10		84	0.999846
1585	11			88	0.999937
1629	10			90	0.90298
1631	10			90	0.90298
1646		16		83	0.994512
1647	16		83		0.994512
1668	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain