SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11421

Length: 2257 nt

UniGene Fasta

>biog3_v1.0_unigene11421
ATATTTCCCATCTCCCAAGGACGAGTGAGAAGGTTGATATCTCCCATGAGAAGAAGGTTGTTGGAGCTCCAGTGCATGCACCTAACTTTAACCTGCGATTCCCGAATGTTTCCTATTGTCCAGGAGGAGTGAGAAGGTTGTATATCTCCCAGAACTTAGAAGGAGAAGGTTGTTCGAGCTCCAGTGCAACAACGATGACAATAGCCAGGAGATTTTCTTCACTTATAGTGCGAGGAGTGCGGTCTGCTGGTTCCCGTTCATCTGCTGTTGGATTGCCAGCTCTATCAAAACAAGCATCGGCAAAGAATTCCAGAATTCAGAGATTTGGAACAGCTGCAAGTGCTTTAGAGGAACCTATAGCACCACCTGTCCAAGTGAAGTACACGCATCTTCTTATTGATGGACAATTCGTTAATGCAGCTTCTGGAAAAACATTTCCAACCTTTGATCCCAGAACAGGGGATTTGATTGCTGATGTGGCTGAAGGCGATGCAGAAGATGTGGACAGAGCTGTAAAGGCTGCACGAAAAGCCTTTGATGAAGGCCCATGGCCAAAAATGACTGCTTATGAAAGATCGTGTATTATGTACCGGTTTGCTGACTTGCTTGAAAAGCATAATGATGAGATTTCAGCTCTGGAAACATGGGACAATGGGAAGCCTTATGAGCAATCATCCTTGGTCGAAGTGCCAATGGCAATACGGATATTTCGTTACTATGCAGGTTGGGCAGATAAAATACATGGCCTTACAATTCCAGCTGATGGACCTTATCATGTTCAAACTTTACATGAACCTATTGGAGTTGCAGGTCAAATCATTCCTTGGAATTTTCCATTGCTTTTGTTTTCTTGGAAAGTGGCTCCAGCACTAGCTTGTGGGAACACTATTGTATTAAAGAGTGCTGAGCAGACATCATTAACAGCTATTTATGCAGCAAAGCTTTTCCATGAGGCTGGACTGCCTTCAGGAGTCCTGAATATCATTCCAGGATATGGTCGAACTGCAGGAGTTGCAATTGCAAAACACATGGATATTGATAAGCTTGCCTTCACAGGATCAACCGAAACTGGTAAAGCAGTACTAGAGTTAGCTTCTAAGAGCAACCTTAAGCGAGTGACATTGGAACTTGGAGGGAAGTCTCCATTTATCGTATGTGAAGATGCTGATGTTGACCAGGCTGTTGAGCTTGCACACACTGCTCTATTTTTCAACCAGGGTCAATGCTGCTGTGCTGCATCACGAACCTATGTACATGAGAGTATCCATGATGAATTTGTAGAAAAGGCAAAAGCACGGTGTTTAAGTCGTGTTGTTGGTGATCCCTTTAAAAAAGGTGTTGAACAAGGTCCTCAGATTGACCAGATGCAGTTTAACAAAATTATGAGTTATATTAAGGCTGGGAAAGAGAGTGGTGCAAAACTTGTAACAGGGGGAGAGCAAATTGGTACCAAGGGCTTCTACATTATGCCCACAGTTTTCTCAGAAGTTCAGGATGACATGCCCATTGCCACTGAAGAAATATTTGGCCCTATACAATCAATTATGAAATTCAAAGATTTAGACGAAGTAATAAAGCGGGCTAATGGTTCTCATTATGGCTTGGCAGCGGGAGTCTTTACAAAGAGTATAGATACCGCAAACACCCTCACTCGTGCGTTACGTGCAGGATCAATCTGGATTAATTGCTTTCACGTTTTTGATGCCGGTGTACCTTTTGGTGGCTATAAAATGAGTGGCACTGGAAGACAAAAGGGAATGTATGGTCTCCAAAGTTACTTACAGGTTAAAGCCGTTGTGTCTCCTTTGAAGAATCCAGCATGGTTGTAGGCTGTTACGTGCCTTCTAATATATTTGATGTATGCAGAACATATCTAATCCCTTGTGCTATTGTCAAGTCAGTCTACTTTGAAATAAACTTTCTATTACTAGAAACGTGTTACCTTCAGAGGGGTGGGATGGTTTGTTTAGCTGGGCATCCTATAGTAACGTCTCTGTAAAACTGTGTAGATTCAAACGTTAGAACTCTGTTTAGCTGTGCATCCTAGAGTAACGTCTCTGAATACGGTGTAGATTCAGACGTTAGAACTCGATTATCTTGTCCGTATAAAATGTGAAATAATAACGTCTCTGTAGTACGGTGTAGATTCAGACGTTAGAACTCAATTATCTTGTCCATATAAAATGTGAAATAAAGGTTGCCACGGTTTCATTGGAACTTTCATGGTTTCTACACTGACGGGCAATCATTGTACATT

Ace file of the UniGene biog3_v1.0_unigene11421

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25461	161/404
SustainPine v2.0	sp_v2.0_unigene28342	241/404
SustainPine v2.0	sp_v2.0_unigene80090	2/404

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase [Oryza sativa]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	aldehyde dehydrogenase family 2 member mitochondrial-like	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF833	IPR008551	-	-
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg:

Fln protein: MTIARRFSSLIVRGVRSAGSRSSAVGLPALSKQASAKNSRIQRFGTAASALEEPIAPPVQVKYTHLLIDGQFVNAASGKTFPTFDPRTGDLIADVAEGDAEDVDRAVKAARKAFDEGPWPKMTAYERSCIMYRFADLLEKHNDEISALETWDNGKPYEQSSLVEVPMAIRIFRYYAGWADKIHGLTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLLFSWKVAPALACGNTIVLKSAEQTSLTAIYAAKLFHEAGLPSGVLNIIPGYGRTAGVAIAKHMDIDKLAFTGSTETGKAVLELASKSNLKRVTLELGGKSPFIVCEDADVDQAVELAHTALFFNQGQCCCAASRTYVHESIHDEFVEKAKARCLSRVVGDPFKKGVEQGPQIDQMQFNKIMSYIKAGKESGAKLVTGGEQIGTKGFYIMPTVFSEVQDDMPIATEEIFGPIQSIMKFKDLDEVIKRANGSHYGLAAGVFTKSIDTANTLTRALRAGSIWINCFHVFDAGVPFGGYKMSGTGRQKGMYGLQSYLQVKAVVSPLKNPAWL*

Protein Length: 546

Fln nts: ATATTTCCCATCTCCCAAGGACGAGTGAGAAGGTTGATATCTCCCATGAGAAGAAGGTTGTTGGAGCTCCAGTGCATGCACCTAACTTTAACCTGCGATTCCCGAATGTTTCCTATTGTCCAGGAGGAGTGAGAAGGTTGTATATCTCCCAGAACTTAGAAGGAGAAGGTTGTTCGAGCTCCAGTGCAACAACG_-_ATGACAATAGCCAGGAGATTTTCTTCACTTATAGTGCGAGGAGTGCGGTCTGCTGGTTCCCGTTCATCTGCTGTTGGATTGCCAGCTCTATCAAAACAAGCATCGGCAAAGAATTCCAGAATTCAGAGATTTGGAACAGCTGCAAGTGCTTTAGAGGAACCTATAGCACCACCTGTCCAAGTGAAGTACACGCATCTTCTTATTGATGGACAATTCGTTAATGCAGCTTCTGGAAAAACATTTCCAACCTTTGATCCCAGAACAGGGGATTTGATTGCTGATGTGGCTGAAGGCGATGCAGAAGATGTGGACAGAGCTGTAAAGGCTGCACGAAAAGCCTTTGATGAAGGCCCATGGCCAAAAATGACTGCTTATGAAAGATCGTGTATTATGTACCGGTTTGCTGACTTGCTTGAAAAGCATAATGATGAGATTTCAGCTCTGGAAACATGGGACAATGGGAAGCCTTATGAGCAATCATCCTTGGTCGAAGTGCCAATGGCAATACGGATATTTCGTTACTATGCAGGTTGGGCAGATAAAATACATGGCCTTACAATTCCAGCTGATGGACCTTATCATGTTCAAACTTTACATGAACCTATTGGAGTTGCAGGTCAAATCATTCCTTGGAATTTTCCATTGCTTTTGTTTTCTTGGAAAGTGGCTCCAGCACTAGCTTGTGGGAACACTATTGTATTAAAGAGTGCTGAGCAGACATCATTAACAGCTATTTATGCAGCAAAGCTTTTCCATGAGGCTGGACTGCCTTCAGGAGTCCTGAATATCATTCCAGGATATGGTCGAACTGCAGGAGTTGCAATTGCAAAACACATGGATATTGATAAGCTTGCCTTCACAGGATCAACCGAAACTGGTAAAGCAGTACTAGAGTTAGCTTCTAAGAGCAACCTTAAGCGAGTGACATTGGAACTTGGAGGGAAGTCTCCATTTATCGTATGTGAAGATGCTGATGTTGACCAGGCTGTTGAGCTTGCACACACTGCTCTATTTTTCAACCAGGGTCAATGCTGCTGTGCTGCATCACGAACCTATGTACATGAGAGTATCCATGATGAATTTGTAGAAAAGGCAAAAGCACGGTGTTTAAGTCGTGTTGTTGGTGATCCCTTTAAAAAAGGTGTTGAACAAGGTCCTCAGATTGACCAGATGCAGTTTAACAAAATTATGAGTTATATTAAGGCTGGGAAAGAGAGTGGTGCAAAACTTGTAACAGGGGGAGAGCAAATTGGTACCAAGGGCTTCTACATTATGCCCACAGTTTTCTCAGAAGTTCAGGATGACATGCCCATTGCCACTGAAGAAATATTTGGCCCTATACAATCAATTATGAAATTCAAAGATTTAGACGAAGTAATAAAGCGGGCTAATGGTTCTCATTATGGCTTGGCAGCGGGAGTCTTTACAAAGAGTATAGATACCGCAAACACCCTCACTCGTGCGTTACGTGCAGGATCAATCTGGATTAATTGCTTTCACGTTTTTGATGCCGGTGTACCTTTTGGTGGCTATAAAATGAGTGGCACTGGAAGACAAAAGGGAATGTATGGTCTCCAAAGTTACTTACAGGTTAAAGCCGTTGTGTCTCCTTTGAAGAATCCAGCATGGTTGTAG___GCTGTTACGTGCCTTCTAATATATTTGATGTATGCAGAACATATCTAATCCCTTGTGCTATTGTCAAGTCAGTCTACTTTGAAATAAACTTTCTATTACTAGAAACGTGTTACCTTCAGAGGGGTGGGATGGTTTGTTTAGCTGGGCATCCTATAGTAACGTCTCTGTAAAACTGTGTAGATTCAAACGTTAGAACTCTGTTTAGCTGTGCATCCTAGAGTAACGTCTCTGAATACGGTGTAGATTCAGACGTTAGAACTCGATTATCTTGTCCGTATAAAATGTGAAATAATAACGTCTCTGTAGTACGGTGTAGATTCAGACGTTAGAACTCAATTATCTTGTCCATATAAAATGTGAAATAAAGGTTGCCACGGTTTCATTGGAACTTTCATGGTTTCTACACTGACGGGCAATCATTGTACATT

Fln Alignment:

Contig11421___MTIARRFSSLIXXXXXXXXXXXXXXXLPALSKQASAKNSRIQRFGTAASALEEPIAPPVQVKYTHLLIDGQFVNAASGKTFPTFDPRTGDLIXXXXXXXXXXXXXXXKAARKAFDEGPWPKMTAYERSCIMYRFADLLEKHNDEISALETWDNGKPYEQSSLVEVPMAIRIFRYYAGWADKIHGLTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLLFSWKVAPALACGNTIVLKSAEQTSLTAIYAAKLFHEAGLPSGVLNIIPGYGRTAGVAIAKHMDIDKLAFTGSTETGKAVLELASKSNLKRVTLELGGKSPFIVCEDADVDQAVELAHTALFFNQGQCCCAASRTYVHESIHDEFVEKAKARCLSRVVGDPFKKGVEQGPQIDQMQFNKIMSYIKAGKESGAKLVTGGEQIGTKGFYIMPTVFSEVQDDMPIATEEIFGPIQSIMKFKDLDEVIKRANGSHYGLAAGVFTKSIDTANTLTRALRAGSIWINCFHVFDAGVPFGGYKMSGTGRQKGMYGLQSYLQVKAVVSPLKNPAWL
A9NUF6__________________MAAGRGFSSLVARAVRSAGARPSAFGTSVSSHQASIRNDGIRRLGTAASALEEPIAPPVQVKHTQLLIDGQFVNAASGKTFPTFDPRTGDVIANVAEGDAPDVNRAVKAARKAFDVGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQASLVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNIVSGFGPTAGAAIARHMDIDKVAFTGSTETGKAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGFYIMPTIFSEVQDDMAIATDEIFGPVQSIIKFKTLDEVIKRANASRYGLAAGVFTQNIETANTLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLQNYLQVKAVVTPLKNPAWL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
574	87			12	0.992554
923		89		10	0.999919
1202	13	86			0.999973
1550	86	13			1.0
1624	88			11	0.999937
1625	88			11	0.999952
1952	18		81		0.999994
1956			90	10	0.90298
2055	10		85	5	0.999793
2056		10		89	0.999919
2057	10	89			0.999919
2059		89		10	0.999919
2082	12		87		0.999964
2174	11		88		0.923564
2180	88			11	0.923564
2210	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain