SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11417

Length: 1314 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11417 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17210	21/399
SustainPine v2.0	sp_v2.0_unigene25038	58/399
SustainPine v2.0	sp_v2.0_unigene33434	151/399
SustainPine v2.0	sp_v2.0_unigene60954	142/399

Source	Descriptions	Term	Type	Identity
AutoFact	Inorganic pyrophosphatase, putative n=1 Tax=Ricinus communis RepID=B9SZB4_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	soluble inorganic pyrophosphatase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inorganic diphosphatase.	EC:3.6.1.1	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	inorganic diphosphatase activity	GO:0004427	Molecular Function	90%
Blast2go	chloroplast part	GO:0044434	Cellular Component	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inorganic pyrophosphatase	IPR008162	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMY6

Fln msg:

Fln protein: MTPPSADGPAKIPVTPSAEGPRNGGESRFPHPPLNERILSSLSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVIMQEPVYPGCFLRARAIGVMPMIDQGEKDDKIIAVCADDPEYRHYKDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASTACEVIQHSMDLYATYIVESLRR*

Protein Length: 230

Fln nts: CGGGAAATCGGACGCCTTCCCTCCTATAAACGTACAGGCGCGGGAAGTGGCCAAGCACAGCACAGCACAGCATCACTGCTCTGAGAGGCGCTATACCTGGTTCCAAGCTTCGAGAATTTGGGGATTTAGTGGCTGATACACCAGGTCCAGTCAACTGTAATCTGCCAAGGATCAACTGGTAGGCCTGTTCCACATTAGTTGAAGCGAAGACACTTGTTTCACTGTATTCAAAC_-_ATGACTCCACCTAGTGCTGATGGTCCAGCAAAGATACCTGTTACACCTAGTGCTGAAGGTCCAAGAAACGGAGGAGAATCACGCTTTCCTCATCCACCTCTGAATGAAAGGATTCTTTCATCTCTATCACGTAGATCTGTTGCTGCACATCCTTGGCATGATCTTGAGATTGGACCTGGAGCTCCTTCGGTGTTCAATTGTGTTGTGGAAATTGGGAAAGGGAGTAAGGTGAAATATGAGCTGGACAAAAAAACCGGTCTGATCAAGGTAGATCGAATTCTGTACTCATCAGTTGTTTATCCCCATAATTATGGTTTCATTCCACGTACCCTGTGCGAGGATAATGATCCATTGGATGTGCTGGTCATCATGCAGGAACCTGTTTATCCAGGATGCTTTCTCCGGGCTAGAGCCATTGGTGTGATGCCTATGATTGATCAGGGAGAAAAAGATGATAAGATAATTGCTGTGTGCGCTGATGACCCCGAGTACCGCCATTACAAAGACATTAAGGAACTTCCTCCACATCGTTTAGCAGAAATTCGACGCTTCTTTGAGGATTACAAGAAAAATGAGAACAAGGAAGTTGCTGTGAATGATTTCCTTCCTGCCTCTACTGCTTGTGAAGTTATCCAACACTCAATGGACTTGTATGCTACATACATCGTTGAAAGTTTACGACGGTGA___AAAGTGCGACAACGAATGATAACTACAACTATGTGAAAACCAGAAATTCAAATATGTGCAAATAATAGTGCTAAATTCAAGTTAGGGATTGTTCATGTCAGTACTGGTAAAACAAAGGGGTATCTTATATGTATCGCCTTGAAATTTTGAGAATTATTAAATGCCAGCAAGACTTGTCGATAGGTTTCTTCGAAAATGTTTCTGGCTTATGATGCATGTAGCATATAATTTATTTTTGCATGGAAAAATTATTACATTTCCCCGTGTTGGAAAGAGCCAAGTTGATCCAATATGGACACTTCCCGGCTAATTATTTCAAGTAATTTTGATATATGTATGTACTTGGCTCTGCCGAGACCCTTTCGAGTGTGTAATTTGATATCTTTACATTTAC

Fln Alignment:

Contig11417___PSAEGPRNGGESRFPHPPLNERILSSLSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVIMQEPVYPGCFLRARAIGVMPMIDQGEKDDKIIAVCADDPEYRHYKDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASTACEVIQHSMDLYATYIVESLRR
A9NMY6__________________PSAEGPRNGGESRFPHPPLNERILSSLSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPIYPGCFLRARAIGVMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASTACEVIQHSMDLYATYIVESLRR

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
366	25		75		0.996473
367	25			75	0.996473
387	20	80			0.995493
388	20		80		0.995493
389		80	20		0.995493
390	80			20	0.995493
434	16		83		0.994512
436		83	16		0.994512
437		83		16	0.994512
462			85	14	0.993533
463	12	75	12		0.975346
464	87			12	0.992554
568	2	92			0.98868
598			96	3	0.993591
606	5		94		0.999996
608	1		94	3	0.95615
609		94		5	0.999996
706	4	95			0.994598
707	6	93			0.999998
775		5		94	0.998894
778			93	6	0.999364
871	7			92	0.999602
971		85		14	0.999981
1011	11	88			0.923564
1013	11		88		0.923564
1057	6		93		0.99903
1059		93	6		0.99903
1060		93		6	0.99903
1065	9		90		1.0
1068		90		9	1.0
1099		94		5	0.998744
1103	2			91	0.995208
1104	8		85	2	0.999999
1105	5	8		85	0.999999
1106	8	91			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1243	1261	TGCTG TGCTG TGCTG TGCT	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain