SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11415

Length: 1743 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11415 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16587	548/602
SustainPine v2.0	sp_v2.0_unigene24953	52/602
SustainPine v2.0	sp_v2.0_unigene65856	1/602

Source	Descriptions	Term	Type	Identity
AutoFact	ADP,ATP carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RVW7_RICCO	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	carrier protein mitochondrial-like	-	-	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	95%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC6

Fln msg:

Fln protein: MAERPKYPSVVQKMSYHQTYLGSRITPSWQAHQNGALQPFKYDGALSAPVQSYGGFQSAFLHASRASNVALAPAHSSVFIPAPAEKGFTGFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLAEPYKGIGDCFAKTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDNKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQNNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVQNEGSKSLFKGAGANILRAIAGAGVLAGYDQLQLLLLGKKFGSGGG*

Protein Length: 393

Fln nts: AATGTAGATGGTAGTCAACGGGGAGTTCGAGGGTGGTGTTGGTTATACGAGGAGTTAGGGCTTCTTAGGGCAAAGACGAAGGAGAGGAGCAGCGGTGCGTAATATCTTAAGATCGTGCAGCGGCAGGGCTCCTTCCGTCGGGAGCTCGGCCTCTTTTGGATGCGCCTTGTCTCGTTTGCCAGATATTGAACGGTAAATCTTGACAGGTTAAA_-_ATGGCAGAGCGGCCCAAGTATCCTTCTGTTGTACAGAAGATGTCTTATCATCAAACCTATCTTGGTTCGAGGATTACACCAAGCTGGCAAGCTCACCAGAATGGTGCTCTTCAGCCCTTTAAGTATGATGGAGCATTGTCGGCCCCTGTCCAGAGTTACGGTGGCTTCCAGAGTGCATTTTTGCATGCTTCTCGTGCAAGCAATGTAGCTTTGGCTCCCGCCCATTCATCTGTCTTTATTCCAGCGCCTGCAGAGAAAGGTTTTACTGGTTTCATGATTGACTTTCTCATGGGAGGGGTTTCTGCTGCAGTATCCAAAACTGCAGCTGCCCCTATTGAGCGTGTCAAACTATTGATACAAAACCAGGATGAAATGTTGAAGTCTGGACGTCTTGCTGAACCATACAAAGGGATTGGGGATTGTTTTGCTAAGACAATGAAGGATGAAGGTGTCATTGCGTTATGGAGAGGAAACACTGCAAATGTTATCCGTTATTTTCCCACTCAGGCTTTGAACTTTGCGTTCAAGGATTACTTTAAGAGACTCTTTAATTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGAAACCTGGCCTCTGGTGGTGCAGCTGGTGCATCTTCTCTCCTTTTTGTTTATTCTTTGGACTATGCTCGAACTCGGCTGGCCAATGATAACAAGGCTGCAAAGAAGGGAGGGGAGAGGCAATTTAATGGGCTTATTGATGTCTACAAGAAAACATTGAAATCTGATGGAATTGCTGGTCTCTATCGTGGGTTCAACATTTCTTGTGTGGGAATTATAGTCTATCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCTGTTGTTTTGACTGGTGATCTTCAGAATAACTTCCTTGCAAGTTTTCTTCTTGGTTGGGGTATTACAATTGGTGCTGGTCTTGCATCGTATCCTATAGATACTGTACGAAGAAGAATGATGATGACTTCCGGTGAGGCAGTTAAGTACAAAAGTTCGTTGGACGCATTTAAACAGATTGTCCAAAACGAAGGTTCCAAGTCACTCTTCAAGGGTGCAGGTGCAAATATCCTCCGTGCTATTGCCGGGGCTGGTGTGTTAGCTGGATATGACCAGTTGCAGTTACTTCTTCTTGGGAAGAAATTTGGCTCTGGCGGTGGCTAA___TATGGATTTGATGATGGTGATAAATATTTAAGACAATGTTTGGACACTAATTTTTAGGATTTTTGGGCCAGGACTCTGGCTCATCTTTTTGAATAATGAGTTTTGGATTATAGTACAATTTTTAGCGGAGTATTGAACTGCATATGAGGTCATCATCTGGAATTTGCAGAGGATAACTCATTGTGCGATGAACAATTTTCTTGATGATGTTGCGGAAGGAAATAATTTTATTCTGATTCCTTTTACATCGTTTTGGTTCTGTTACCAAGTATACACATGGTTTGATTGTTTATATGTCGAGTTGTTTCTTTTGTTAGTTAACTATAACATGGAATGTACAGAAAGCTGGATGTCG

Fln Alignment:

Contig11415___MAERPKYPSVVQKMSYHQTYLGSRITPSWQAHQNGALQPFKYDGALSAPVQSYGGFQSAFLHASRASNVALAPAHSSVFIPAPAEKGFTGFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLAEPYKGIGDCFAKTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXLFVYSLDYARTRLANDNKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQNNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVQNEGSKSLFKGAGANILRAIAGAGVLA
A9NVC6__________________MAERPKYPSVVQKMSC-QTYLGSRITPSWQVRQNGALQPFKYDGALSAPVQSYGGLQSAFLHASRASNVALAPGHSPVFIPAPAEKGFKGFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLAEPYKGIGDCFGRTIKDEGFIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLVDVYKKTLKSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQDNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFNQIVKNEGTKSLFKGAGANILRAIAGAGVLA

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
942	28	71			1.0
1023	97			2	0.960269
1024	97			2	0.960269
1043		95		4	0.999973
1044			95	4	0.999973
1064	2	97			0.971188
1065	2	97			0.971188
1067		97	2		0.971188
1159		96		3	0.982166
1161		3		96	0.984346
1229	4		95		0.995482
1232			94	5	0.997984
1233	94			5	0.998397
1313	3		89		0.998304
1442		7	92		0.999532
1443	7	92			0.999532
1482	6		93		0.999153
1520	4	2	93		0.985381
1522	2	93		4	0.985381
1523		95		4	0.997494
1567	5		94		0.997984
1690	88	11			1.0
1707	89			10	0.999919
1708		89		10	0.999919
1712	66	33			1.0
1714		80	20		0.995493
1715	25		25		0.995533
1717			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain