SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11410

Length: 1033 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11410

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2406	24/25

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9RJ73_RICCO	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	auxin-induced protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV79

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 289 - 351

Fln protein: NVIFVFYRQAVASLVISPFAYFLERSERPAMTCAVFWEIFTLAFVGITMNQNLYFAGLQDTSSTFASATTNLIPVVTFVLATTFRLEHVNIRSIYGQAKVVGTLVCVGGAMVMTLYKGPVLLKAVSRLGLDTWVLGALLLFASCLAWSGWLTFQAPVVKKYPVxxFAFFVQTYCIRVKGPVFAAVFNPVATILVAILELLILHVKLHLGSLLGAIMIIVGLYVVLWGKAQDKSELDTDTEKNGLENDSNNNITITATEESSIDINQPLLQHDGSAEHLNHSNTQITRE*

Protein Length: 290

Fln nts: AATGTCATATTTGTATTTTACAGGCAAGCTGTTGCCTCATTGGTCATCAGCCCTTTTGCTTATTTTCTAGAAAGAAGTGAAAGACCTGCAATGACCTGTGCTGTCTTCTGGGAGATTTTTACGCTTGCATTTGTTGGGATCACTATGAACCAGAATTTGTACTTTGCGGGCTTGCAAGACACTTCGTCTACATTCGCTTCTGCAACTACAAACCTCATTCCTGTTGTCACATTTGTGTTGGCCACAACATTTCGATTGGAGCATGTTAATATCAGGAGTATTTATGGCCAAGCAAAAGTTGTGGGCACCCTAGTCTGTGTGGGTGGTGCAATGGTTATGACCTTATACAAGGGCCCTGTACTCCTGAAAGCTGTTAGTCGGCTAGGTCTTGACACATGGGTGCTGGGGGCCTTACTGCTGTTTGCTAGCTGTTTGGCTTGGTCTGGCTGGCTCACATTTCAGGCTCCAGTTGTGAAGAAATATCCAGTTxxxxxxTTTGCATTCTTTGTACAAACCTATTGCATCCGAGTAAAGGGACCAGTCTTTGCTGCAGTGTTCAATCCAGTCGCAACAATACTGGTTGCAATTTTGGAACTTCTCATTCTCCATGTAAAGCTTCATCTAGGAAGTTTGTTGGGAGCAATCATGATCATTGTAGGACTTTATGTTGTGTTGTGGGGCAAGGCACAGGATAAATCTGAATTGGATACAGACACAGAAAAGAATGGACTTGAAAATGATTCCAACAACAACATCACAATTACAGCAACAGAAGAGTCTAGCATCGACATTAATCAACCCCTATTACAACATGATGGCAGTGCTGAACATTTAAATCACTCAAACACACAAATTACTCGCGAGTAATTTTCGATTAGATCTAAACTTTCGTTAGATCTAAACAGAGCTGAGAAGTAGGTGCTTTTAAGTTCCTGCCCTATAGAAAACCATTGTCAAAATTCGCAAGAATATAATATATTTTTCTTCCCTTCCTATCTTCTATTATTTGACATAAAGGCCATGGTCACCAGTTT

Fln Alignment:

Contig11410___FVFYRQAVASLVISPFAYFLERSERPAMTCAVFWEIFTLAFVGITMNQNLYFAGLQDTSSTFASATTNLIPVVTFVLATTFRLEHVNIRSIYGQAKVVGTLVCVGGAMVMTLYKGPVLLKAVSRLGLDTWVLGALLLFASCLAWSGWLTFQAPVVKKYPVQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFAFFVQTYCIRVKGPVFAAVFNPVATILVAXXXXXXXXXXXXXXXXXXAIMIIVGLYVVLWGKAQDKSELDTDTEKNGLENDSNNNITITATEESSIDINQPLLQHDGSAEHLNHSNTQITRE
A9NV79__________________FVAYRQAVASLVISPFAFFLER---------------------ITINQNCYFAGLQYTSSTFASATTNLIPVVTFVMATTFRLENVNIRSIYGQAKVVGTVVCVGGAMVMTLYKGPVLLKAVIGLGLDTWELGAILLFASCFVWSGWITFQAPVVKKYPAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFAFFVQTYCIRVKGPVFAAVFNPTSTILVAILELLILHVKLHLGSLLGAIMIIVGLYVVLWGKAKDQSNLDTSTEKNGLENGSSNNI----REDSNIDINQPLLQNEGSAEHLNLSHTQTSHE

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
261	16		83		0.994512
262		83		16	0.994512
263	83		16		0.994512
271	83			16	0.994512
273	16	83			0.994512
275			83	16	0.994512
277	83			16	0.994512
351			87	12	0.992554
352			87	12	0.992554
368	85	14			0.993533
370			85	14	0.993533
371		85		14	0.993533
478			75	25	0.996473
479	75			25	0.996473
491	20	80			0.995493
521	25			75	0.996473
524		75		25	0.996473
545		80		20	0.995493
597	12	87			0.992554
598	12			87	0.992554
600		87	12		0.992554
751	83			16	0.994512
752		83		16	0.994512
768			80	20	0.995493
769		80		20	0.995493
771	75	25			0.996473
779		14	85		0.993533
780	14			85	0.993533
781		85		14	0.993533
892	25	25		25	0.997389
895	25		75		0.996473
985	33			33	0.997753
986	25			75	0.996473
988			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain