SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11377

Length: 499 nt

UniGene Fasta

>biog3_v1.0_unigene11377
AATGTGGACATGGTGAGCAGAGTGATCGGAGGAGAGGAGAAAGTTGTGCTTGTACTGGACTCGGTTGAATTGAGTGGAAGATGGTGGACGAAAGCGGATATTCTGGTTTTTGAAACCGGGCATTGGTGGGGTCACAATGGGCGCGACGCAAGAAAATGGGATTACATGCAGGATGGGAGGAATTTCTACGGAGACATGGATCGAATGGTTGCGTATAGGAAAGCGCTGACGACATGGGCTAACTGGGTCGATTCAAACATTGATTTCCACAGAACCGGAGTTTTCTTCCGTAGTTTTTCCGGTGCCCATTTGAGTGCAAGGGAGTGGAACAATCGTTCAGGACGCAACTGTTACGAGGAAACAGAACCGATCTTGGGGTCTTCATATCCAGGGCCGTACCCTCCGCAGCTAGAAATAGCAGGGGGCGTGGTGAGCCGGATGAAATCACGCGTTCCCTTCCTAAACATCACAACGTTGTCATTGTTGAGAAAGGACGCCC

Ace file of the UniGene biog3_v1.0_unigene11377

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5282	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	trichome birefringence-like 45 protein [Arabidopsis thaliana] gb\|AAL16254.1\|AF428324_1 At2g30010/F23F1.7 [Arabidopsis thaliana] gb\|AAC31851.1\| expressed protein [Arabidopsis thaliana] gb\|AAV85725.1\| At2g30010 [Arabidopsis thaliana] gb\|AEC08335.1\| trichome	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	trichome birefringence-like 45 protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to fungus	GO:0009620	Biological Process	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR004253	-	-
Sma3	WRC	IPR014977	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWQ7

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 166 - 412

Fln protein: NVDMVSRVIGGEEKVVLVLDSVELSGRWWTKADILVFETGHWWGHNGRDARKWDYMQDGRNFYGDMDRMVAYRKALTTWANWVDSNIDFHRTGVFFRSFSGAHLSAREWNNRSGRNCYEETEPILGSSYPGPYPPQLEIAGGVVSRMKSRVPFLNITTLSLLRKDA

Protein Length: 167

Fln nts: AATGTGGACATGGTGAGCAGAGTGATCGGAGGAGAGGAGAAAGTTGTGCTTGTACTGGACTCGGTTGAATTGAGTGGAAGATGGTGGACGAAAGCGGATATTCTGGTTTTTGAAACCGGGCATTGGTGGGGTCACAATGGGCGCGACGCAAGAAAATGGGATTACATGCAGGATGGGAGGAATTTCTACGGAGACATGGATCGAATGGTTGCGTATAGGAAAGCGCTGACGACATGGGCTAACTGGGTCGATTCAAACATTGATTTCCACAGAACCGGAGTTTTCTTCCGTAGTTTTTCCGGTGCCCATTTGAGTGCAAGGGAGTGGAACAATCGTTCAGGACGCAACTGTTACGAGGAAACAGAACCGATCTTGGGGTCTTCATATCCAGGGCCGTACCCTCCGCAGCTAGAAATAGCAGGGGGCGTGGTGAGCCGGATGAAATCACGCGTTCCCTTCCTAAACATCACAACGTTGTCATTGTTGAGAAAGGACGCCC

Fln Alignment:

Contig11377___VDMVSRVIGGEEKVVLVLDSVELSGRWWTKADILVFETGHWWGHNGRDARKWDYMQDGRNFYGDMDRMVAYRKALTTWANWVDSNIDFHRTGVFFRSFSGAHLSAREWNNRSGRNCYEETEPILGSSYPGPYPPQLEIAGGVVSRMKSRVPFLNITTLSLLRKDA
A9NWQ7__________________VDMVTTTVQGQQKVVLRLDSAEINGRGWKGADILVFNSGHWWTHTG-NLRGWDYMQEGNRFYTTMDQMVAYQKGMATWGNWIDSNIDPRRTKVFFRSFSPSHSSI-----TNGGNCYSEKEPTAGSSYLGAYPPQFQVAERVVRSMRSPVSFLNITTLSLLRQDA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
52		33	66		0.997452
53	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain