SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11372

Length: 794 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11372

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3093	15/16

Source	Descriptions	Term	Type	Identity
AutoFact	Phytoene synthase n=1 Tax=Salicornia europaea RepID=A1KYX8_SALEU	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	phytoene synthase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phytoene synthase.	EC:2.5.1.32	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Carotenoid biosynthesis	00906	85%
Blast2go	Biosynthesis of terpenoids and steroids	01062	85%
Blast2go	Biosynthesis of plant hormones	01070	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	85%
Blast2go	geranylgeranyl-diphosphate geranylgeranyltransferase activity	GO:0016767	Molecular Function	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Squalene/phytoene synthase	IPR002060	-	0.0	-
Sma3	Terpenoid synthase	IPR008949	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
38		66		33	0.997452
387	16			83	0.994512
388	16		83		0.994512
391		83		16	0.994512
400	14		85		0.993533
401	14	85			0.993533
404		85		14	0.993533
508		85		14	0.993533
549	28			71	1.0
551		71	14	14	0.984337
552		14	14		0.984337
553	14			85	0.993533
554	14			85	0.993533
555	14		85		0.993533
574		85		14	0.993533
575		85		14	0.993533
595	14			85	0.993533
596	16		83		0.994512
597			83	16	0.994512
599		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain