SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11366

Length: 1471 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11366 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7762	37/334
SustainPine v2.0	sp_v2.0_unigene15588	119/334
SustainPine v2.0	sp_v2.0_unigene24044	51/334
SustainPine v2.0	sp_v2.0_unigene24084	3/334
SustainPine v2.0	sp_v2.0_unigene24112	3/334
SustainPine v2.0	sp_v2.0_unigene43349	119/334

Source	Descriptions	Term	Type	Identity
AutoFact	Flavanone 3-hydroxylase n=1 Tax=Ginkgo biloba RepID=Q5XPX2_GINBI	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	flavanone 3-hydroxylase	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYQ5

Fln msg:

Fln protein: MAPTTAVVNDRPDFLVTAETPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIAGEERDRVRDEVSKACSEWGIFQVVDHGVPQELVETMTQLSRAFFALPAEEKLKYDMRGGKRGGFVVSSHLQGEAVLDWREICTYFSYPLHQRDYTRWPVKPDGWREVVEKYSESLMGLACKLLGIISEALGLETEAVTNACVEMDQKVVINFYPKCPQPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYTRKMSRDIELARQKKLAKVAEKEQSEISK*

Protein Length: 365

Fln nts: AATGTAGTATGCGGGGGTACCTCGGTTGAGGAAACCCTCTTTCCTGCTGCCGATCATCCAAGGAGGTCTTTGAGTGCACCGATTTTCCGAGTCTTGCTGCCCAATTTGTACTCAGCCAGGAAACA_-_ATGGCGCCCACAACAGCCGTGGTTAACGATCGCCCCGATTTCCTTGTAACGGCGGAGACGCCGAAGTCCCTGCAGTCCATTTTTATCCGAGACGAGGACGAGCGCCCCAAGGTGGCTTACAATCAATTCAGCAAAGACATTCCCGTCATTTCCCTCTCTGGTATCGCCGGGGAAGAGAGGGACCGCGTGAGAGACGAAGTGAGCAAGGCCTGTTCTGAATGGGGAATTTTCCAGGTGGTTGATCATGGTGTTCCCCAGGAGCTTGTGGAGACCATGACTCAGCTTTCCAGGGCTTTCTTCGCCCTCCCTGCAGAGGAGAAGCTCAAATACGACATGAGAGGTGGAAAGCGTGGAGGATTTGTGGTGAGCAGCCATCTGCAGGGCGAAGCCGTTCTCGACTGGAGAGAAATCTGCACTTACTTCTCTTATCCCCTTCACCAGCGTGATTACACAAGGTGGCCTGTCAAGCCCGATGGTTGGAGGGAGGTTGTGGAGAAATACAGCGAATCCCTTATGGGTTTGGCATGCAAGCTGTTGGGGATAATATCAGAGGCATTGGGATTGGAAACTGAAGCAGTGACCAATGCTTGTGTGGAGATGGACCAGAAAGTGGTGATAAACTTCTATCCCAAATGCCCACAACCAGACATGACATTGGGGCTGAAAAGGCACACCGATCCGGGCACCATCACTCTTCTCCTGCAAGACCAAGTTGGAGGCCTACAGGCTACCAAGGACGATGGCAAAAACTGGATTACTGTGGAGCCCATTCAAGGAGCCTTTGTTGTCAATTTGGGAGATCATATGCATTATCTGAGCAATGGCAAGTTCAAGACCGCGGACCATCAAGCGGTGGTGAATTCGAACAGCAGCAGGCTGTCTATTGCGACGTTTCAGAATCCAGCGCAGGAGGCCATCGTGTACCCGTTGGATGGAGTTGTAAAGGAGGCGGAAGGCGAGAAGTGTTTCATGGAAGAGCCCATCACTTTTGCACAGATGTACACCAGAAAGATGAGCCGAGACATCGAGCTCGCCCGCCAGAAAAAGTTGGCCAAAGTCGCTGAGAAGGAACAATCAGAGATTTCCAAGTGA___TGTGAAGATCAATTAAAGAAAAATGCATCGATGTAGATTTTTGTGTGTGTCTGCCTGGATGATGGATGATGTCTGGGTTCATGTGTTCTCGGAGATCTTAGTAACAATAAAAGCTTTCACCAACTTGTCTACATTTTATATTTTGAAGTTGGATTGTACAGCACACTTCTACAATTTAACCATAGTAATCGTTTGTATTCATTTCCCGTTTATCTATAGTTAATTTATCAAACTGCGTGAGTTAATAAAACATG

Fln Alignment:

Contig11366___MAPTTAVVNDRPDFLVTAETPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIAGEERDRVRDEVSKACSEWGIFQVVDHGVPQELVETMTQLSRAFFALPAEEKLKYDMRGGKRGGFVVSSHLQGEAVLDWREICTYFSYPLHQRDYTRWPVKPDGWREVVEKYSESLMGLACKLLGIISEALGLETEAVTNACVEMDQKVVINFYPKCPQPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYTRKMSRDIELARQKKLAKVAEKEQS
A9NYQ5__________________MAPTAVVASDRPDFLVTAEVPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIEGAERGRVIDEVSKACSEWGIFQVVDHGVPKELVDSMTRLSRDFFALPAEEKLKYDMRGGKRGGFVVSSHLQGESVLDWREICTYFSYPLHQRDYSRWPVKPDGWREIVEKYSEALMGLACNMLAIVSEALGLESDAVTKACVEMDQKVVVNFYPKCPEPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKSADHQAVVNSNSSRLSIATFQNPAQEGIVYPLDGVVKEAEGEKCFMEEPITFTQMYTRKMSRDIELARQKKMAKVAEQEKS

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
72		20		80	0.995493
75			80	20	0.995493
153	40			60	1.0
156		60	40		1.0
164	16			83	0.994512
165	16	83			0.994512
166		83		16	0.994512
177	16		83		0.994512
178	83	16			0.994512
180		83		16	0.994512
181		83		16	0.994512
217	80	20			0.995493
219	80			20	0.995493
228	14		85		0.993533
232		85		14	0.993533
234	12			87	0.992554
235	12			87	0.992554
237			12	87	0.992554
559			14	85	0.993533
560			85	14	0.993533
569	16		83		0.994512
570		16	83		0.994512
571	16	83			0.994512
573		80		20	0.995493
600	14			85	0.993533
601		14		85	0.993533
602	14			85	0.993533
608	16		83		0.994512
623		16		83	0.994512
626	11			88	0.923564
628			88	11	0.923564
630		88		11	0.923564
727	88	11			0.923564
728	11		88		0.923564
731	11			88	0.923564
734		88	11		0.923564
735	88			11	0.923564
950	8		91		0.999766
952		91		8	0.999766
1049	80		20		0.995493
1069		16	83		0.994512
1071			85	14	0.993533
1085	20		80		0.995493
1167		75		25	0.996473
1212	33			66	0.997452
1214	33			66	0.997452
1331			50	50	1.0
1443	15	84			0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain