SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11364

Length: 871 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11364 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23722	41/41

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ML domain protein n=1 Tax=Catharanthus roseus RepID=F2VPY9_CATRO	-	-	2.0e-33	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	ml domain protein	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	MD-2-related lipid-recognition	IPR003172	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
85	25			75	0.996473
88		75		25	0.996473
147		33		66	0.997452
166	20		80		0.995493
168		80	20		0.995493
207		83		16	0.994512
208		83	16		0.994512
209	83			16	0.994512
303		12		87	0.992554
327	11		88		0.923564
330	88			11	0.923564
404	10		90		0.90298
405		90		10	0.90298
406			10	90	0.90298
418	10		90		0.90298
419		10	90		0.90298
421			90	10	0.90298
430		90	10		0.90298
464	14			85	0.993533
467	14	85			0.993533
486	14	85			0.993533
487	14			85	0.993533
490			85	14	0.993533
597	16			83	0.994512
598		16	83		0.994512
600			85	14	0.993533
707	10			90	0.999898
708		10		90	0.999898
709	10		90		0.999898
710		89		10	0.999919
768		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain