SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11363

Length: 1780 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11363

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22188	125/125

Source	Descriptions	Term	Type	Identity
AutoFact	3-hydroxy-3-methylglutaryl-CoA-synthase n=1 Tax=Pinus sylvestris RepID=P93773_PINSY	-	-	96%
FL-Next	tr=3-hydroxy-3-methylglutaryl-CoA-synthase; Pinus sylvestris (Scots pine).	-	-	99%
Blast2go	hydroxymethylglutaryl- synthase-like	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Hydroxymethylglutaryl-coenzyme A synthase C-terminal	IPR013746	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	IPR013528	-	-
Sma3	Hydroxymethylglutaryl-CoA synthase, eukaryotic	IPR010122	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: P93773

Fln msg:

Fln protein: MASRPENVGILAMEIYFPTTCVQQEDLETFDGVSKGKYTIGLGQDCMTFCTDLEDVISMSLTAVTSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEKCGNTEIEGVDSTNACYGGTAALFNCINWIESSSWDGRYGLVVATDSAVYAEGAARPTGGAAAVAMLIGPNAPIATESKYRGTHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKRFCNKFEKEEGRQFSLLDTDYIAFHSPYNKLVQKSFGRLLFNDFSRHARSVGKDAQQKLEPFAGLSEQDSYNSRDLEKVSQQLAKPLYDAKIQPSTLLPKQVGNMYTASLYAALASIIHNKHTTLDGQRVMMFSYGSGLASTLFSFKIREGQFPFTLSNITEVMDVQNKLDSRHEFLPEDFVENLKRMETLYGAKDFVSTSQLSLLRPGAFYLTKVDSMYRRFYSRKVISAGDNFEKSKLANGTTHDEL*

Protein Length: 476

Fln nts: CGGGATTCATTCTGCAGTGATTGCAAAAGAGTAGGTTTTGTGCCTGGTATTATTAGCTGCTTTCCCACTCTCAGGATTTCTGAATTCGGATTCATTAAGTTTGTCAAAACA_-_ATGGCATCTCGTCCAGAGAATGTTGGGATTTTGGCTATGGAGATCTACTTTCCTACTACATGTGTCCAGCAGGAGGACTTGGAAACTTTTGATGGAGTAAGTAAAGGAAAATATACAATTGGTCTTGGACAAGACTGCATGACTTTCTGCACTGACTTGGAAGACGTTATTTCTATGAGTTTGACAGCAGTAACGTCACTTTTGGAAAAATATGAAATTGATCCAAAGCAAATTGGTCGTTTGGAAGTTGGCAGCGAAACTGTTATTGACAAGAGCAAGTCAATAAAGACGTGGTTGATGCATATTTTTGAGAAGTGTGGTAATACTGAAATTGAAGGTGTGGACTCAACAAATGCATGCTATGGAGGAACTGCAGCCCTGTTTAACTGTATCAACTGGATTGAAAGCAGTTCTTGGGATGGAAGATATGGTCTTGTTGTAGCTACAGACAGTGCAGTCTATGCTGAAGGGGCAGCACGACCTACTGGAGGAGCAGCTGCTGTTGCAATGCTGATAGGGCCTAATGCTCCAATAGCAACTGAGAGCAAATACAGGGGAACACATATGGCTCATGTCTATGACTTTTATAAGCCTAATCTGGCTAGTGAATATCCGGTTGTAGATGGGAAGCTTTCACAAACTTGTTATCTCATGGCATTGGATTCATGCTACAAACGGTTTTGTAATAAGTTTGAAAAGGAAGAAGGAAGACAGTTTTCTCTTCTAGATACAGATTATATAGCATTTCATTCTCCATACAATAAGCTTGTACAAAAGAGCTTTGGTCGCCTGTTGTTCAATGATTTCTCAAGACATGCCAGGTCTGTTGGAAAGGATGCACAACAGAAGCTAGAACCCTTTGCTGGCTTGTCTGAACAAGATAGCTACAATAGTCGTGACCTAGAAAAGGTTTCTCAGCAGCTTGCAAAGCCATTGTATGATGCAAAAATTCAACCATCAACTTTACTGCCAAAGCAAGTAGGCAACATGTATACAGCATCTCTCTATGCAGCATTAGCCTCCATTATTCACAACAAACATACGACTCTGGATGGTCAACGGGTAATGATGTTCTCTTATGGCAGTGGGCTTGCTTCTACATTGTTTTCTTTTAAAATCCGGGAGGGTCAATTCCCTTTTACTCTGTCAAATATTACAGAAGTTATGGACGTACAAAACAAACTTGATTCTCGTCATGAGTTTCTTCCTGAAGATTTCGTGGAAAACTTGAAGCGGATGGAAACTCTGTACGGAGCAAAGGACTTCGTTTCAACTTCTCAGCTCAGTTTGCTGCGGCCTGGCGCTTTCTATTTGACTAAAGTAGATTCCATGTACCGGCGTTTCTATTCCCGCAAAGTTATTAGTGCTGGTGACAATTTTGAGAAGTCAAAACTTGCCAATGGTACCACCCATGATGAATTGTAA___ACATGGTTTATGTTTGTGAGGTTAAGTAGTACTGATATTCGTATTATGAGGATGGGAGGCTGAATGTAAGTTCTGCATTGTAACATAGCATTCTGGAGTCTCCCATTCCTTTTCTTTGGTATCTGTTTACTTTTGTTTTAAGTAAACGTGGAAGTGTTGAGAAAATAATTCAAAGGATGCTCCTCAAAGAGCATTTGTTTGAATCTCCTTTAGCCTGGGGGATCTATTTTAATTACAAAACATT

Fln Alignment:

Contig11363___MASRPENVGILAMEIYFPTTCVQQEDLETFDGVSKGKYTIGLGQDCMTFCTDLEDVISMSLTAVTSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEKCGNTEIEGVDSTNACYGGTAALFNCINWIESSSWDGRYGLVVATDSAVYXXXXXXXXXXXXXXXMLIGPNAPIATESKYRGTHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKRFCNKFEKEEGRQFSLLDTDYIAFHSPYNKLVQKSFGRLLFNDFSRHARSVGKDAQQKLEPFAGLSEQDSYNSRDLEKVSQQLAKPLYDAKIQPSTLLPKQVGNMYTASLYAALASIIHNKHTTLDGQRVMMFSYGSGLASTLFSFKIREGQFPFTLSNITEVMDVQNKLDSRHEFLPEDFVENLKRMETLYGAKDFVSTSQLSLLRPGAFYLTKVDSMYRRFYSRKVISAGDNFEKSKLANGTTHDEL
P93773__________________MASRPENVGILAMEIYFPTTCVQQEDLETFDGVSKGKYTIGLGQDCMTFCTDLEDVISMSLTAVTSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEKCGNTEIEGVDSTNACYGGTAALFNCINWIESSSWDGRYGLVVATDSAVYAEGAARPTGGAAAVAMLIGPNAPIATESKYRGTHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKRFCNKFEKEEGRQFSLLDTDYIAFHSPYNKLVQKSFGRLLFNDFSRHARSVGKDAQEKLEPFAGLSEQDSYNSRDLEKVSQQLAKPLYDAKIQPSTLLPKQVGNMYTASLYAALASIIHNKHTTLDGQRVMMFSYGSGLASTLFSFKIREGQFPFTLSNITEVMDVQNKLDSRHEFLPEDFVENLKRMETLYGAKDFVSTSQLSLLRPGAFYLTKVDSMYRRFYSRKVISAGDNFEKSKLANGTTHDEL

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
167	11	88			0.923564
169	88		11		0.923564
170		88		11	0.923564
171	88			11	0.923564
173			88	11	0.923564
223		14		85	0.993533
226	85			14	0.993533
257	14			85	0.993533
258	14	85			0.993533
262	28		71		1.0
327	85	14			0.993533
337	83			16	0.994512
338	83			16	0.994512
408	14		85		0.993533
412		85		14	0.993533
439	11		88		0.923564
443		11		88	0.923564
446	88		11		0.923564
448		11	88		0.923564
449	11		88		0.923564
526	10			90	0.90298
527		10	90		0.90298
528	10		90		0.90298
529			90	10	0.90298
568			90	10	0.90298
776	13	86			0.999973
955		80	20		1.0
964		13	86		0.999973
966	86			13	0.999973
967		86		13	0.999973
968	15	84			0.999986
970	15			84	0.999986
980	10			90	0.90298
981		10	90		0.90298
982	10			90	0.90298
983		90		10	0.90298
1017	88	11			0.923564
1019	77			11	0.968132
1020			88	11	0.923564
1407	10		90		0.90298
1409	10	90			0.90298
1435		12	87		0.992554
1479	83			16	0.994512
1487	83		16		0.994512
1520		85		14	0.993533
1521		85		14	0.993533
1527		16		83	0.994512
1557	10		90		0.999898
1562			88	11	0.999937
1565	12		87		0.999964
1566		12		87	0.999964
1568		87		12	0.999964
1569		25		75	1.0
1581		16		83	0.999991
1628	11			88	0.923564
1631			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain