SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11335

Length: 500 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11335
ACAGATGCCCATGTGGCAGAAACCCTGGAAAAGCTTGCCCAGCAGACCAGACAGACGCTGCAGGGCCTGGACTCAGCCGGCCAAGAGGATGTTGCTGGAGAAAAGCTGGTTGAAAATCTCTTCAAACAATTCGAGGAGATCGGTGGAACCCAGGATATGCAATCTGTTGTTGACACAATGATGCGTCAACTATTGTCTAAGGAGATTCTCCATGAGCCAATGAAGGAGATAGGAGAGCGATATCCTAAATGGCTGGAAGAAAGAAAATCTACAATTAGCGAAGAGGATTATACACGCTATTCTTGCCAATATGAACTTATCAAGCAACTTTGCAAAGTATACGAGGCAGAGCCAGACAATTTTGATAAAATAGTTGAACTTATGCAGAAAATGCAAGACTGTGGTCAACCTCCAAGTGATATTGTGCAAGAGCTTGCTCCTGGCCTTAATCTAGGAAGTGAAGGAGTTCCAGCGCTCTCCGAACTTTTTCAGACAATTCC

Ace file of the UniGene biog3_v1.0_unigene11335 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14961	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxisome biogenesis protein 19-2 n=2 Tax=Arabidopsis RepID=PE192_ARATH	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	peroxisomal protein pex19 family protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	peroxisome organization	GO:0007031	Biological Process	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	cytosol	GO:0005829	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pex19 protein	IPR006708	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRV0

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 166 - 254

Fln protein: TDAHVAETLEKLAQQTRQTLQGLDSAGQEDVAGEKLVENLFKQFEEIGGTQDMQSVVDTMMRQLLSKEILHEPMKEIGERYPKWLEERKSTISEEDYTRYSCQYELIKQLCKVYEAEPDNFDKIVELMQKMQDCGQPPSDIVQELAPGLNLGSEGVPALSELFQTI

Protein Length: 167

Fln nts: ACAGATGCCCATGTGGCAGAAACCCTGGAAAAGCTTGCCCAGCAGACCAGACAGACGCTGCAGGGCCTGGACTCAGCCGGCCAAGAGGATGTTGCTGGAGAAAAGCTGGTTGAAAATCTCTTCAAACAATTCGAGGAGATCGGTGGAACCCAGGATATGCAATCTGTTGTTGACACAATGATGCGTCAACTATTGTCTAAGGAGATTCTCCATGAGCCAATGAAGGAGATAGGAGAGCGATATCCTAAATGGCTGGAAGAAAGAAAATCTACAATTAGCGAAGAGGATTATACACGCTATTCTTGCCAATATGAACTTATCAAGCAACTTTGCAAAGTATACGAGGCAGAGCCAGACAATTTTGATAAAATAGTTGAACTTATGCAGAAAATGCAAGACTGTGGTCAACCTCCAAGTGATATTGTGCAAGAGCTTGCTCCTGGCCTTAATCTAGGAAGTGAAGGAGTTCCAGCGCTCTCCGAACTTTTTCAGACAATTCC

Fln Alignment:

Contig11335___TDAHVAETLEKLAQQTRQTLQGLDSAGQEDVAGEKLVENLFKQFEEIGGTQDMQSVVDTMMRQLLSKEILHEPMKEIGERYPKWLEERKSTISEEDYTRYSCQYELIKQLCKVYEAEPDNFDKIVELMQKMQDCGQPPSDIVQELAPGLNLGSEGVPALSELF
A9NRV0__________________TDAHVAETLEKLAQQTRQTLQGLDSATQEDPAGEKLVENLFKQFEEIGGTQDMQSVVDTMMRQLLSKEILHEPMKEIGERYPKWLEERKSTISKEDYERYSCQYELIKQLCKVYEAEPDNFDKIVELMQKMQDCGQPPSDIVQELAPGLNLGSEGGPALSELF

SNPs (tot: 7)

Position	A %	G %	T %	Probability
243	25		75	0.996473
256	40		60	1.0
257	40		60	1.0
259	60	40		1.0
260		60	40	1.0
305		25	75	0.996473
312	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain