SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11334

Length: 903 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11334

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2759	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	Pectin acetylesterase, putative n=1 Tax=Ricinus communis RepID=B9RIX3_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	notum-like protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pectinacetylesterase	IPR004963	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0A1

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 300 - 421

Fln protein: CRAASTGAVCLDGSLPAYRFNRGSGAGANSWLLNRTGEFSGILSNKPWENPDFYNWNRVKLMYCDGASFAGDVEEKVSGFYFRGQRIWHAMIDDLLAKGMDKAEKALLSGCSAGGLATYLHCDNFRELLPNTATVKCHADAGFFLDAKDIAGMYHIRSIYKSTVTLQGVVKNLPKACTSSQPDPAQCFFPQYVLPYIQTPIFVLNAAYDTWQVHNILVPGSADPHGHWHYCKQNPVNCTSTQLDILQGYRTEMLNTLETFKHSETGGMFINSCFCHCQSEDQDDWFAPNSPMMNNKKLVH

Protein Length: 301

Fln nts: AATGTAGAGCAGCAAGTACTGGAGCCGTTTGCCTGGATGGATCTTTACCGGCATACCGTTTTAATAGAGGATCTGGCGCAGGAGCGAACAGTTGGCTGTTGAATAGGACGGGTGAATTTTCAGGCATTTTGAGCAACAAGCCTTGGGAAAATCCAGACTTTTATAATTGGAATAGGGTGAAACTTATGTATTGTGATGGAGCTTCATTTGCTGGGGATGTGGAAGAAAAGGTATCAGGTTTTTATTTTAGAGGGCAAAGAATTTGGCATGCTATGATTGATGATCTTTTGGCAAAGGGAATGGACAAAGCAGAAAAGGCTCTTCTTTCTGGCTGCTCAGCAGGCGGTTTAGCAACATATTTGCATTGTGACAATTTTCGTGAGCTTTTACCGAACACTGCAACAGTAAAATGTCATGCTGATGCTGGATTTTTTCTTGATGCGAAAGATATTGCTGGAATGTATCATATAAGATCCATCTATAAAAGCACGGTTACTTTGCAGGGAGTAGTGAAGAACTTGCCAAAGGCTTGTACATCCTCGCAGCCAGATCCAGCACAGTGCTTCTTTCCACAGTATGTATTGCCATATATCCAGACACCCATATTTGTCTTGAATGCGGCATATGATACTTGGCAGGTTCATAATATTTTGGTTCCGGGGTCAGCTGATCCTCATGGTCACTGGCATTATTGCAAGCAAAATCCAGTAAATTGCACATCAACTCAACTAGATATATTGCAAGGTTATAGGACAGAGATGCTTAATACATTGGAAACTTTTAAGCACTCTGAAACAGGAGGCATGTTTATCAATTCATGCTTCTGCCATTGCCAATCAGAGGATCAAGATGATTGGTTCGCACCAAACTCTCCGATGATGAATAACAAGAAATTAGTACATT

Fln Alignment:

Contig11334___RAASTGAVCLDGSLPAYRFNRGSGAGANSWLL----------------------------NRTGEFSGILSNKPWENPDFYNWNRVKLMYCDGASFAGDVEEKVSGFYFRGQRIWHAMIDDLLAKGMDKAEKALLSGCSAGGLATYLHCDNFRELLPNTATVKCHADAGFFLDAKDIAGMYHIRSIYKSTVTLQGVVKNLPKACTSSQPDPAQCFFPQYVLPYIQTPIFVLNAAYDTWQVHNILVPGSADPHGHWHYCKQNPVNCTSTQLDILQGYRTEMLNTLETFKHSETGGMFINSCFCHCQSEDQDDWFAPNSPMMNNKKL
A9P0A1__________________RAANTGAVCLDGTLPAYRFDRGCGSGANNWLLQFEGGGWCNDTESCILRKTTHRGSSAYMDKVAVFSGILSDKPSENPDFYNWNRVKLMYCDGASFAGDVEEKVSDLYFRGQRIWHAMIDDLLAKGMDKAEKALLSGCSAGGLATYLHCDNFRELLPSSATVKCHADAGFFLDAKDIAGVYHIRSFYKSTVTLQGVVKNLPKACVSSQSDPTQCFFPQYVLPYIQTPIFVLNAAYDTWQVHNILAPGSEDPHGHWHYCKQNPVNCTSSQLEILQGYRMEMLNALETFKPSETGGMFINSCFCHCQSENQDTWFQSNSPMMNNKTI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
450	75			25	0.996473
498		50		50	1.0
511	16		83		0.994512
513	83		16		0.994512
514			83	16	0.994512
653		33		66	0.997452
654	33			66	0.997452
744		14	85		0.993533
745	14		14		0.984337
748	85			14	0.993533
749			85	14	0.993533
813	20			80	0.995493
814		20		80	0.995493
817		80		20	0.995493
881		33	66		0.997452
884			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain