SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11330

Length: 997 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11330

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5486	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis thaliana] gb\|AAL07040.1\| putative oligosaccharyl transferase STT3 [Arabidopsis thaliana] gb\|AED92738.1\| dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3-like	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	89%
Blast2go	Various types of N-glycan biosynthesis	00513	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	89%
Blast2go	response to salt stress	GO:0009651	Biological Process	89%
Blast2go	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Oligosaccharyl transferase, STT3 subunit	IPR003674	-	-
Sma3	MPPN	IPR007846	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABH2

Fln msg: STOP codon was not found. Distance to subject end: 203 aas, your sequence is longer than subject: 332 - 169

Fln protein: KYESVIYEFDPYFNYRVTKYLTKSGVYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTMWWVFNSLNIPLSVETVCVFTAPIFSANAAWATYLLTKEVKGVGAGLTAAAILAMVPSYISRSVAGSYDNEAVAIFALIFTFYLYIKTLNTGSLFYATLNALAYFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYSPLVVLGTLLAALVPVVGFNAVMTSEHFASFLVFIIVQVVALGHYIKRTVSAKMFKVAITLVISVGMFVSIALVAILVALVAASPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVHI

Protein Length: 333

Fln nts: CAAGTATGAGAGCGTCATTTATGAGTTCGATCCTTACTTCAATTACAGAGTTACAAAGTATCTCACAAAGAGTGGAGTCTACGACTTTTGGAACTGGTTCGATGACCGAACCTGGTACCCACTGGGACGTGTCATTGGGGGAACAGTGTATCCTGGTCTCACTTTGACAGCAGGGACAATGTGGTGGGTATTTAATTCTCTCAACATCCCGCTTTCCGTAGAAACTGTTTGTGTCTTCACTGCTCCCATCTTCTCAGCAAATGCAGCTTGGGCAACATATCTTTTGACAAAGGAAGTTAAAGGTGTTGGTGCAGGCCTCACTGCAGCAGCCATTCTAGCAATGGTGCCTTCATACATCTCACGATCCGTGGCTGGCAGTTATGATAATGAGGCTGTAGCTATATTTGCTTTGATCTTTACATTCTATCTATATATCAAGACATTGAACACTGGATCCCTCTTTTATGCTACTTTAAATGCCTTAGCTTACTTTTATATGGTCTGTTCCTGGGGAGGTTACACTTTCATAATAAATCTTATTCCAATGCATGTTCTTCTATGTATTGTGACCGGCCGGTACTCATCTCGTCTTTACATTGCTTATTCACCTCTGGTAGTTTTGGGTACTTTGCTGGCTGCTCTTGTTCCTGTTGTTGGTTTCAACGCAGTCATGACATCTGAGCATTTTGCGTCATTCCTGGTGTTTATCATAGTTCAGGTTGTCGCGTTGGGGCATTATATAAAGCGTACTGTGTCAGCTAAGATGTTCAAAGTGGCAATAACTCTTGTAATTTCTGTTGGAATGTTTGTGTCTATTGCATTGGTAGCAATATTGGTTGCGTTAGTGGCAGCAAGTCCCACAAAGGGATGGAGTGGACGAAGTCTAAGTCTTCTTGATCCGACCTATGCGAGCAAGTATATTCCTATTATTGCGAGTGTCAGTGAACATCAACCACCTACTTGGCCTTCATATTTTATGGATATAAATGTACACATT

Fln Alignment:

Contig11330___KYESVIYEFDPYFNYRVTKYLTKSGVYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTMWWVFNSLNIPLSVETVCVFTAPIFSANAAWATYLLTKEVKGVGAGLTAAAILAMVPSYISRSVAGSYDN
D5ABH2__________________KYESVIHEFDPYFNYRVTKYLTKSGVYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTMWWVFNALNIPLSVETVCVFTAPIFSANAAWATYLLKKEVKGIGAGLTAATILAMVPSYISRSVAGSYDN

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
37	33	66			0.997452
176	25		75		0.996473
179		75	25		0.996473
180	75			25	0.996473
383	16			83	0.994512
397	16			83	0.994512
398			83	16	0.994512
419	20			80	0.995493
467	25			75	0.996473
479	75	25			0.996473
482			75	25	0.996473
761		14	85		0.993533
762	14	85			0.993533
764	85			14	0.993533
800	14		85		0.993533
841	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain