SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11322

Length: 975 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11322 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11074	31/33

Source	Descriptions	Term	Type	Identity
AutoFact	Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] emb\|CAB11468.1\| arginyl-tRNA synthetase [Arabidopsis thaliana] emb\|CAB38959.1\| arginyl-tRNA synthetase [Arabidopsis thaliana] emb\|CAB79485.1\| arginyl-tRNA synthetase [Arabidopsis thaliana] gb\|AEE851	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	78%
Blast2go	arginyl-trna synthetase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arginine--tRNA ligase.	EC:6.1.1.19	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	arginyl-tRNA aminoacylation	GO:0006420	Biological Process	85%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	arginine-tRNA ligase activity	GO:0004814	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Arginyl-tRNA synthetase, class Ia	IPR001278	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Arginyl tRNA synthetase N-terminal domain	IPR005148	-	-
Sma3	DALR anticodon binding	IPR008909	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Arginyl-tRNA synthetase, class Ia, core	IPR015945	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HGX8

Fln msg: your sequence is shorter than subject: 320 - 637

Fln protein: ESFYNPYIPSVLQMLDEKELIVESDGAKVIQIEGQNIPLIVVKRDGGFNYASTDMTALWYRLNEEKAQWIIYVTDVGQSLHFEMVFSAAKLAGWLPTNNDLPYPKTRHVGFGLVLGSDGKRFRTRSSEVVRLVDLLDEAKNRSKQELIARGREDEWTAEELDNAAEAIGYGAVKYADLKNNRLTNYTFNFDQMLDVRGNTAVYLLYAHARICSIIRKSGKDIEELKKTQSIHLNHESERQLGLHLIQFSEIVEDACTELLPNTLCEYLYNLSENFTKFYSTCKVVGSEEETSRLLLCEATAIVMRECFKLLGITPLYKL*

Protein Length: 321

Fln nts: GGAAAGCTTTTACAATCCATATATCCCCAGTGTGCTCCAAATGCTGGATGAGAAGGAATTGATTGTGGAAAGTGACGGTGCCAAAGTAATCCAAATCGAAGGGCAAAACATTCCATTAATTGTTGTAAAGAGGGATGGTGGCTTCAACTATGCTTCGACTGATATGACAGCACTGTGGTACCGGCTTAATGAAGAGAAAGCACAGTGGATCATATACGTGACAGATGTTGGTCAATCATTGCATTTTGAGATGGTTTTTAGCGCCGCAAAGCTTGCTGGTTGGCTGCCTACCAACAACGATTTACCATATCCAAAAACAAGGCATGTTGGATTTGGCCTAGTTCTTGGTTCAGATGGTAAACGCTTTCGGACTCGTAGTTCAGAGGTTGTTCGCCTTGTAGATTTGCTTGATGAGGCCAAGAACCGGAGCAAGCAGGAACTGATAGCTCGTGGCAGGGAAGATGAGTGGACAGCGGAAGAACTAGATAATGCCGCTGAAGCAATTGGATATGGAGCAGTGAAGTATGCTGATTTGAAGAATAATAGGTTAACTAACTACACATTTAATTTTGATCAAATGTTGGACGTTCGGGGAAATACAGCGGTTTATCTTTTGTATGCTCATGCGCGCATATGTTCTATCATTAGAAAGTCTGGGAAAGACATAGAAGAACTGAAGAAGACACAAAGTATTCATTTGAATCATGAAAGTGAACGACAGCTGGGGCTGCACCTCATTCAGTTTTCAGAGATTGTTGAAGATGCTTGCACGGAGCTTTTGCCAAACACATTATGTGAATACCTCTACAATCTATCTGAAAATTTCACGAAGTTCTATTCAACTTGCAAGGTGGTGGGATCAGAGGAAGAAACAAGTAGGTTGTTGTTGTGCGAGGCTACTGCAATTGTCATGAGAGAATGTTTCAAGTTACTGGGGATCACACCTCTCTACAAATTATAG___TGTTTAAAAGACAA

Fln Alignment:

Contig11322___ESFYNPYIPSVLQMLDEKELIVESDGAKVIQIEGQNIPLIVVKRDGGFNYASTDMTALWYRLNEEKAQWIIYVTDVGQSLHFEMVFSAAKLAGWLPTNNDLPYPKTRHVGFGLVLGSDGKRFRTRSSEVVRLVDLLDEAKNRSKQELIARGREDEWTAEELDNAAEAIGYGAVKYADLKNNRLTNYTFNFDQMLDVRGNTAVYLLYAHARICSIIRKSGKDIEELKKTQSIHLNHESERQLGLHLIQFSEIVEDACTELLPNTLCEYLYNLSENFTKFYSTCKVVGSEEETSRLLLCEATAIVMRECFKLLGITPLYKL
F6HGX8__________________ESFYNPYIPGVIEQLSNQGLVEESQGARVIHIEGVNIPLIVVKSDGGYNYASTDMAALWYRLNEEKAEWIIYVTDVGQQQHFEMVFSAAKLAGWLPANDNM-YPKASHVGFGLVLGEDGKRFRTRNTEVVRLVDLLDEAKNRSKSVLIERGKAAEWTEQELEHTAEAVGYGAVKYADLKNNRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGVLTLDHDDERGLGLHLLQFSEVVEEACTNLLPNVLCEYLYNLSENFTKFYSNCQVVGSAEETSRLLLCEATAVVMRKCFHLLGITPVYKI

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
83	14	85			0.993533
84	14		85		0.993533
85		85		14	0.993533
86	85		14		0.993533
87		85		14	0.993533
158	16	83			0.994512
171	14		85		0.993533
173			85	14	0.993533
189		14	85		0.993533
190	14			85	0.993533
246	11	88			0.923564
249		88		11	0.923564
456	33			66	0.997452
459		66		33	0.997452
461	14		85		0.993533
462	14	85			0.993533
464		85	14		0.993533
465		85		14	0.993533
668		16		83	0.994512
671			85	14	0.993533
690	16		83		0.994512
693			83	16	0.994512
694		83		16	0.994512
753		83	16		0.994512
760	16		83		0.994512
761		16		83	0.994512
768	16			83	0.994512
769		83		16	0.994512
770		83	16		0.994512
771	83			16	0.994512
930		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain