SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11315

Length: 1033 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11315 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16609	3/15
SustainPine v2.0	sp_v2.0_unigene24077	1/15
SustainPine v2.0	sp_v2.0_unigene37026	10/15

Source	Descriptions	Term	Type	Identity
AutoFact	Membrane acyl-CoA binding protein n=1 Tax=Agave americana RepID=Q4L0H4_AGAAM	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	acyl- binding protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	70%
Blast2go	response to cold	GO:0009409	Biological Process	70%
Blast2go	response to lead ion	GO:0010288	Biological Process	70%
Blast2go	lead ion binding	GO:0032791	Molecular Function	70%
Blast2go	fatty-acyl-CoA binding	GO:0000062	Molecular Function	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	phosphatidic acid binding	GO:0070300	Molecular Function	70%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%
Blast2go	glyoxysome	GO:0009514	Cellular Component	70%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA-binding protein, ACBP	IPR000582	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYI9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 228 - 403

Fln protein: ESTE*EQMELYGLYKVATEGPCNIPQPSPLKITARAQWHAWQRLGNMNPEEAMEQYIGVLNKIFPRWSESLLEKNRMKDPDSSQKSASSGGMTSVFSSFMHQEGSDDEAKLEMIHSYAREADTAGLLQALEQGVPVDLRDSQGRTPLHWAVDRGHMEVVEHLLSRGADVNAKDMEGQTTLHYATMCEREGIAKYLIKHGADPSSKDNDGVTPYNLCPKDWDWLSENA*

Protein Length: 229

Fln nts: TAGAGAGCACGGAGTAAGAGCAAATGGAGCTGTACGGCCTGTACAAAGTAGCCACGGAGGGTCCCTGCAACATTCCTCAGCCCTCGCCTCTCAAGATCACCGCTCGTGCCCAATGGCATGCTTGGCAACGATTGGGAAACATGAATCCAGAGGAGGCTATGGAGCAATACATTGGTGTCCTCAACAAGATATTTCCTCGTTGGAGTGAAAGCCTTCTAGAAAAGAACAGAATGAAGGATCCTGACAGTTCTCAGAAATCGGCAAGCTCAGGAGGAATGACATCTGTCTTTAGCTCATTTATGCATCAAGAGGGATCAGATGATGAAGCGAAGTTGGAGATGATCCATTCATATGCCAGGGAAGCGGACACTGCAGGTCTGCTTCAAGCATTAGAGCAAGGAGTACCAGTAGATTTAAGGGATAGTCAAGGCAGAACTCCATTACACTGGGCTGTAGATCGCGGCCACATGGAAGTTGTGGAGCATCTCCTTTCCAGGGGTGCAGATGTCAATGCAAAGGACATGGAAGGACAGACGACGCTTCATTATGCGACAATGTGTGAGAGGGAGGGCATTGCTAAGTATCTGATAAAACATGGTGCAGATCCATCTTCTAAGGACAATGATGGTGTCACGCCTTACAATCTCTGCCCCAAAGATTGGGACTGGTTGTCTGAAAATGCCTGA___TTGATCTGTAATATGATACTCTGTCTAATATATATTACACTATGCGTACATATGATATGTATAAAGTTAATGTGCTACTTGCACTTGCTACAATACTTCTCACTCTGATGGATATGATGTGGAGAATTACGGAAAGTACCAATTTGATTGATTTGCCACCAAACATTATGTTATAGCTTACCAATTGACGTAGGCTCTAACCTAATGCTGTCTGAAAATTGGTGTCAAAATAGATTGGGAATACTTGCAAAACATGATGGTGTGCCTAGCAGTTTCAACTACTGGAAATACAAAATTTGGTTTCTTTCTATGTAAGAAAGAGCAATATATATCTAAATGTCAACATT

Fln Alignment:

Contig11315___QMELYGLYKVATEGPCNIPQPSPLKITARAQWHAWQRLGNMNPEEAMEQYIGVLNKIFPRWSESLLEKNRMKDPDSSQKSASSGGMTSVFSSFMHQEGSDDEAKLEMIHSYAREADTAGLLQALEQGVPVDLRDSQGRTPLHWAVDRGHMEVVEHLLSRGADVNAKDMEGQTTLHYATMCEREGIAKYLIKHGADPSSKDNDGVTPYNLCPKDWDWLSENA
A9NYI9__________________QMELYGLYKVATEGSCNIPQPSPLKITARAKWHAWQRLGNMNPEAAMEQYIGLLNKIFPSWNESLLEKNRTKDPDSSQLSASSGGMTSVFSSFMHQEGSDDEAKLEMIHSYAREADTAGLLQAIEQGVPVDLRDSQGRTPLHWAVDRGHMEVVEHLLSKGADVNAKDMEGQTALHYATVCEREGIAKYLIKHGADPSSKDNDGVTPYNLCPKDWDWLSENA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
577	20	80			0.995493
578	20		80		0.995493
579		80		20	0.995493
630	20	80			0.995493
631		20		80	0.995493
633		80		20	0.995493
832	25		75		0.996473
833	25	75			0.996473
835			25	75	0.996473
933			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain