SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11314

Length: 683 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11314

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11361	7/14
SustainPine v2.0	sp_v2.0_unigene30874	6/14

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 n=1 Tax=Panax notoginseng RepID=F4YF70_9APIA	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	allene oxide synthase	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	lipid biosynthetic process	GO:0008610	Biological Process	73%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	73%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	73%
Blast2go	heme binding	GO:0020037	Molecular Function	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome P450	IPR001128	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
396	83	16			0.994512
398			83	16	0.994512
399	83			16	0.994512
420	22		77		0.999999
424		80		20	0.999996
481			62	37	1.0
498	12		87		0.992554
499		12		87	0.992554
500	12		87		0.992554
501		87		12	0.992554
509	14		42	42	1.0
511	42	42	14		1.0
512	14	85			0.993533
513	14	71		14	0.984337
514		71		28	1.0
515	50		33	16	1.0
542	20	80			0.995493
545	80			20	0.995493
546			80	20	0.995493
565	75			25	0.996473
573		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain