SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11296

Length: 2209 nt

UniGene Fasta

>biog3_v1.0_unigene11296
GTACAACGAAATTCAGCACAACTTTTAGAACCTCTGATGCTTTGCCATGAATCAATGCAATCATGTGGGTCAGATATCCTAGCTGATGGACGCCTGGCTGACCTTATTCGGCGGGTTTCAACATTCGGAATGATATTGATGAAACTTGATCTGCGCCAGGAATCTGGCAAACATTCAGAAACTTTAGATGCCATTACAGAGTATTTAGACATGGGTACCTATAGTGAATGGGATGAAGAAAAGAAGCTGGAATTTCTTGTAACTGAGCTCAAAGGCAAGCGGCCCCTTGTTCCCCCAACTATTGAGGTTTCAGCTGAAGTAAGGGAGGTTCTAGATACATTCCGTGTAGCTGCAGAATTAGGCAGTGAATCACTTGGAGCTTATGTTATTTCAATGGCTTCAAAGGCTAGTGATATTCTGGCTGTGGAGCTGCTACAGAAAGATGCACGTCTAGCCGTAAGTGGAGAACTAGGACGACCTTGCCCTGATAACACCTTGCGTGTTGTGCCCCTATTTGAGACTGTCAAAGATTTGAGAGGTGCTGGATCAGTCATTCGGAAGTTATTATCAATAGATTGGTATCGAAACCATATTATTGAAAATGATAATGGACACCAGGAGGTTATGGTTGGTTATTCTGATTCAGGAAAAGATGCAGGGCGTTTCACTGCTGCATGGGAATTATATAAAGCACAGGAAGATGTTGTAGCTGCTTGTAAAGAATTTGGCATTAAAGTTACCCTATTCCATGGCCGTGGAGGAAGTATTGGGCGTGGTGGTGGACCTACATATCTTGCCATTCAATCTCAACCGCCTGGTTCTGTCATGGGAACTCTCCGATCGACAGAGCAGGGAGAAATGGTCCAGGCAAAGTTTGGCTTGGCACAAACAGCAGTGCGACAACTAGAAATCTACACAACTGCTGTTTTGCTTGCAACTTTACATCCCCCAGATCCACCTCGTAGTATGAATTGGCGAGGGGTAATGGAAAAGATATCAGAAATCAGTCGGCAATATTATAGAAGCACTGTTTATGAAAATGAACAGTTTTTAGAGTACTTCCGTGAAGCCACTCCTGAAGCAGAGCTTGGTAATCTAAATATCGGAAGCCGTCCAACAAGGAGGAAAAAGTCTTCTGAGATTGGGCATCTCCGTGCAATTCCTTGGATATTTGCATGGACACAAACCAGATTTGTTTTACCTGCATGGCTTGGTGTTGGAGCAGGCCTCGAAGCAGCCTGTGCAAAAGGATACAAAGAAGAATTACAAGCCATGTACAGAGAATGGCCATTTTTTCAATGCACAATTGATTTAATTGAAATGGTACTTGCAAAGTCAGATTTATCCATTGCTAAGCACTATGATGAAGTTTTGGTGTCTCCTAGTAGACAGAAGTTAGGTGAAGAGTTGCGAGAAGCCTTTTGCATGACAGAGAAGTATGTGTTGCTCGTTAGTGGTCACGAAAAACTTACGGAAAACAACAAAAGTTTGAAGCGTTTGATTGAAAGCAGACTTCCTTTTTTAAATCCCATTAACATGATCCAAGTGGAGATATTGCGTCGTCTGCGAAGAGATGTGAATAACCCCAAACTTCGTGATGCATTGCTTATCACCATCAATGGTATAGCTGCAGGCATGAGGAACACTGGCTGAGCAGCTTGTTTAGGGATGCCACTGTTTAATGATTCAAATGAGTATGCATGTATGCATGTGTGCATCCCACGTCGGAATATACCCTATTCAGATTGATATTTGTATAAGGTACAGAAAGCAAGCAGTGTGGTGTGACATTTCTTCAAGCAAGCGCATTGGACTGATACTGGTAGGCTGAGTTTAAGACGGAATGGAAGATTGGTCAATAAAATTTGCGCTGGGCAGAAACTAAAAGAAAAGTGTGTACTTTTCTTTGCTGAAAAGGGAGTGAAAAGATAGCGAGTGAACTTTTGTTTGATGGAGCTTAAGCAGCTGGCAATTAAGAAAATTGAGTTCTAATTTTGTTGTGCACTGTCCTAGATATCAGTGCGATGTTTTTGTATTATAGGAGTAATATGTTTAGTGCAAGTTTTGAACTTACATGACTACATAATGTTACATGAGCAAGAAATGGTTTTCAAGACAAGATGTACTTCAAATATTGTTTGAGGCTGTTGCATGTTCCTGTCAAGATGCTTCGTGTTAACCACTGTATATTAACAACCGCAGCGTATTG

Ace file of the UniGene biog3_v1.0_unigene11296

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6313	75/82
SustainPine v2.0	sp_v2.0_unigene62465	5/82
SustainPine v2.0	sp_v2.0_unigene66833	1/82

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoenolpyruvate carboxylase n=1 Tax=Glycine max RepID=Q6Q2Z9_SOYBN	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ37

Fln msg: your sequence is shorter than subject: 551 - 1073

Fln protein: VQRNSAQLLEPLMLCHESMQSCGSDILADGRLADLIRRVSTFGMILMKLDLRQESGKHSETLDAITEYLDMGTYSEWDEEKKLEFLVTELKGKRPLVPPTIEVSAEVREVLDTFRVAAELGSESLGAYVISMASKASDILAVELLQKDARLAVSGELGRPCPDNTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRNHIIENDNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLAQTAVRQLEIYTTAVLLATLHPPDPPRSMNWRGVMEKISEISRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSEIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLEAACAKGYKEELQAMYREWPFFQCTIDLIEMVLAKSDLSIAKHYDEVLVSPSRQKLGEELREAFCMTEKYVLLVSGHEKLTENNKSLKRLIESRLPFLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG*

Protein Length: 552

Fln nts: GTACAACGAAATTCAGCACAACTTTTAGAACCTCTGATGCTTTGCCATGAATCAATGCAATCATGTGGGTCAGATATCCTAGCTGATGGACGCCTGGCTGACCTTATTCGGCGGGTTTCAACATTCGGAATGATATTGATGAAACTTGATCTGCGCCAGGAATCTGGCAAACATTCAGAAACTTTAGATGCCATTACAGAGTATTTAGACATGGGTACCTATAGTGAATGGGATGAAGAAAAGAAGCTGGAATTTCTTGTAACTGAGCTCAAAGGCAAGCGGCCCCTTGTTCCCCCAACTATTGAGGTTTCAGCTGAAGTAAGGGAGGTTCTAGATACATTCCGTGTAGCTGCAGAATTAGGCAGTGAATCACTTGGAGCTTATGTTATTTCAATGGCTTCAAAGGCTAGTGATATTCTGGCTGTGGAGCTGCTACAGAAAGATGCACGTCTAGCCGTAAGTGGAGAACTAGGACGACCTTGCCCTGATAACACCTTGCGTGTTGTGCCCCTATTTGAGACTGTCAAAGATTTGAGAGGTGCTGGATCAGTCATTCGGAAGTTATTATCAATAGATTGGTATCGAAACCATATTATTGAAAATGATAATGGACACCAGGAGGTTATGGTTGGTTATTCTGATTCAGGAAAAGATGCAGGGCGTTTCACTGCTGCATGGGAATTATATAAAGCACAGGAAGATGTTGTAGCTGCTTGTAAAGAATTTGGCATTAAAGTTACCCTATTCCATGGCCGTGGAGGAAGTATTGGGCGTGGTGGTGGACCTACATATCTTGCCATTCAATCTCAACCGCCTGGTTCTGTCATGGGAACTCTCCGATCGACAGAGCAGGGAGAAATGGTCCAGGCAAAGTTTGGCTTGGCACAAACAGCAGTGCGACAACTAGAAATCTACACAACTGCTGTTTTGCTTGCAACTTTACATCCCCCAGATCCACCTCGTAGTATGAATTGGCGAGGGGTAATGGAAAAGATATCAGAAATCAGTCGGCAATATTATAGAAGCACTGTTTATGAAAATGAACAGTTTTTAGAGTACTTCCGTGAAGCCACTCCTGAAGCAGAGCTTGGTAATCTAAATATCGGAAGCCGTCCAACAAGGAGGAAAAAGTCTTCTGAGATTGGGCATCTCCGTGCAATTCCTTGGATATTTGCATGGACACAAACCAGATTTGTTTTACCTGCATGGCTTGGTGTTGGAGCAGGCCTCGAAGCAGCCTGTGCAAAAGGATACAAAGAAGAATTACAAGCCATGTACAGAGAATGGCCATTTTTTCAATGCACAATTGATTTAATTGAAATGGTACTTGCAAAGTCAGATTTATCCATTGCTAAGCACTATGATGAAGTTTTGGTGTCTCCTAGTAGACAGAAGTTAGGTGAAGAGTTGCGAGAAGCCTTTTGCATGACAGAGAAGTATGTGTTGCTCGTTAGTGGTCACGAAAAACTTACGGAAAACAACAAAAGTTTGAAGCGTTTGATTGAAAGCAGACTTCCTTTTTTAAATCCCATTAACATGATCCAAGTGGAGATATTGCGTCGTCTGCGAAGAGATGTGAATAACCCCAAACTTCGTGATGCATTGCTTATCACCATCAATGGTATAGCTGCAGGCATGAGGAACACTGGCTGA___GCAGCTTGTTTAGGGATGCCACTGTTTAATGATTCAAATGAGTATGCATGTATGCATGTGTGCATCCCACGTCGGAATATACCCTATTCAGATTGATATTTGTATAAGGTACAGAAAGCAAGCAGTGTGGTGTGACATTTCTTCAAGCAAGCGCATTGGACTGATACTGGTAGGCTGAGTTTAAGACGGAATGGAAGATTGGTCAATAAAATTTGCGCTGGGCAGAAACTAAAAGAAAAGTGTGTACTTTTCTTTGCTGAAAAGGGAGTGAAAAGATAGCGAGTGAACTTTTGTTTGATGGAGCTTAAGCAGCTGGCAATTAAGAAAATTGAGTTCTAATTTTGTTGTGCACTGTCCTAGATATCAGTGCGATGTTTTTGTATTATAGGAGTAATATGTTTAGTGCAAGTTTTGAACTTACATGACTACATAATGTTACATGAGCAAGAAATGGTTTTCAAGACAAGATGTACTTCAAATATTGTTTGAGGCTGTTGCATGTTCCTGTCAAGATGCTTCGTGTTAACCACTGTATATTAACAACCGCAGCGTATTG

Fln Alignment:

Contig11296___SAQLLEPLMLCHESMQSCGSDILADGRLADLIRRVSTFGMILMKLDLRQESGKHSETLDAITEYLDMGTYSEWDEEKKLEFLVTELKGKRPLVPPTIEVSAEVREVLDTFRVAAELGSESLGAYVISMASKASDILAVELLQKDARLAVSGELGRPCPDNTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRNHIIENDNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLAQTAVRQLEIYTTAVLLATLHPPDPPRSMNWRGVMEKISEISRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSEIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLEAACAKGYKEELQAMYREWPFFQCTIDLIEMVLAKSDLSIAKHYDEVLVSPSRQKLGEELREAFCMTEKYVLLVSGHEKLTENNKSLKRLIESRLPFLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG
C0PQ37__________________SAQLLEPLMLCYESMQSCGSEILADGRLADLIRRVSTFGMILMKLDLRQESGKHSETLDAITEYLDMGTYSEWDEEKKLEFLVTELKGKRPLVPPTIEVSAEVREVLDTFRVAAELGSESLGAYVISMASKASDILAVELLQKDARLAVSGELGRPCPHTTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRNHIIENDNGHQEVMVGYSDSGKDSGRFTAAWELYKAQEDVVAACKEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSLMGTLRSTEQGEMVQAKFGLAQTAVRQLEIYTTAVLLATLHPPDPPRSANWREVMEKISEISRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSGIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLEAACAKGYKEELQAMYREWPFFQCTIDLIEMVLAKSDISIAKHYDEVLVSPCRQKLGGELREAFCMTEKYVLLVSGHEKLTENNKSLKRLIESRLPFLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
184		25		75	0.996473
192		80		20	0.995493
235		25		75	0.996473
236	25		75		0.996473
237	75			25	0.996473
238	75			25	0.996473
250	33		66		0.997452
251		33	66		0.997452
253	66			33	0.997452
387	10		90		0.90298
388		10		90	0.90298
440	14		85		0.993533
441	85	14			0.993533
443	85			14	0.993533
444			85	14	0.993533
885	25	75			0.996473
886	25			75	0.996473
889			75	25	0.996473
916	80		20		0.995493
933	11			88	0.923564
934	11			88	0.923564
936	11		88		0.923564
1901	20			80	0.995493
1902		20	80		0.995493
1903	20			80	0.995493
1904			80	20	0.995493
1940	20	80			0.995493
1941		20	80		0.995493
1943			80	20	0.995493
1960	25		75		0.996473
1961			75	25	0.996473
1962	75			25	0.996473
1963			75	25	0.996473
1986			75	25	0.996473
1987	75		25		0.996473
1988	75			25	0.996473
1989	75	25			0.996473
2101	20	80			0.995493
2105	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain