SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11278

Length: 651 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11278

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1340	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Alanyl-tRNA synthetase n=4 Tax=Arabidopsis RepID=SYA_ARATH	-	-	79%
FL-Next	Isoform Cytoplasmic of Alanyl-tRNA synthetase OS=Arabidopsis thaliana GN=ALATS	-	-	50%
Blast2go	alanyl-trna synthetase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine--tRNA ligase.	EC:6.1.1.7	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	alanyl-tRNA aminoacylation	GO:0006419	Biological Process	88%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	alanine-tRNA ligase activity	GO:0004813	Molecular Function	88%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Homeobox protein, antennapedia type, conserved site	IPR001827	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Alanyl-tRNA synthetase, class IIc	IPR002318	-	-
Sma3	Phosphoesterase, DHHA1	IPR003156	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	-
Sma3	Protein of unknown function DUF544	IPR007518	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, core domain	IPR018165	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
321		25		75	0.996473
375		80		20	0.995493
376	80		20		0.995493
377	80			20	0.995493
489	12		87		0.992554
492	87			12	0.992554
493	87			12	0.992554
514			85	14	0.993533
515			85	14	0.993533
566	20		80		0.995493
570			80	20	0.995493
571			80	20	0.995493
632	33		66		0.997452
637	66			33	0.997452
638	33	33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain