SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11266

Length: 748 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11266 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7923	12/17
SustainPine v2.0	sp_v2.0_unigene28875	4/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0790 FOG: TPR repeat, SEL1 subfamily	-	-	3.0e-25	27%
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	0.0	73%
Blast2go	protein	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	76%
Blast2go	ER-associated protein catabolic process	GO:0030433	Biological Process	76%
Blast2go	binding	GO:0005488	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	membrane	GO:0016020	Cellular Component	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
234			83	16	0.994512
235		83	16		0.994512
239		83		16	0.994512
240		83	16		0.994512
253	16		83		0.994512
258	83		16		0.994512
260	83		16		0.994512
268	50		50		1.0
269	16		83		0.994512
276		16		83	0.994512
311	33			66	1.0
329		83		16	0.994512
346	12			87	0.992554
347	12	87			0.992554
367	87			12	0.992554
380	42		57		1.0
420			83	16	0.999991
450		30		70	1.0
451	30		70		1.0
457			70	30	1.0
480		30		70	1.0
501			33	66	1.0
507	66		33		1.0
534	62		37		1.0
592		12	87		0.992554
611		25	75		1.0
612	87			12	0.992554
616		75		25	1.0
651			14	85	0.993533
654	25	75			0.996473
656	25	75			0.996473
657	75			25	0.996473
658	75			25	0.996473
663	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain